Merge pull request #647 from usc-isi-i2/dev

Release 1.3.0, updated visualize-graph command
usc-isi-i2 · Apr 6, 2022 · e672997 · e672997
2 parents c3e1eb2 + 7ac650f
commit e672997
Show file tree

Hide file tree

Showing 46 changed files with 3,898 additions and 1,135 deletions.
diff --git a/.github/workflows/docker-buil-push-dev.yml b/.github/workflows/docker-buil-push-dev.yml
@@ -12,8 +12,8 @@ jobs:
       - name: Login to Docker Hub
         uses: docker/login-action@v1
         with:
-          username: uscisii2admin
-          password: ${{ secrets.USCISIDOCKERHUB }}
+         username: ${{ secrets.USC_ISI_DOCKERHUB_USERNAME }}
+         password: ${{ secrets.USC_ISI_DOCKERHUB_PASSWORD }}
       -
         name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v1

diff --git a/.github/workflows/docker-build-and-push-image.yml b/.github/workflows/docker-build-and-push-image.yml
@@ -12,8 +12,8 @@ jobs:
       - name: Login to Docker Hub
         uses: docker/login-action@v1
         with:
-          username: uscisii2admin
-          password: ${{ secrets.USCISIDOCKERHUB }}
+          username: ${{ secrets.USC_ISI_DOCKERHUB_USERNAME }}
+          password: ${{ secrets.USC_ISI_DOCKERHUB_PASSWORD }}
       -
         name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v1

diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml
@@ -12,17 +12,6 @@ jobs:
         uses: actions/setup-python@v2
         with:
           python-version: '3.8'
-# 11-Oct-2021: Adding the system conda gives pip
-# access python 3.9 site packages:
-#
-# /usr/share/miniconda/lib/python3.9/site-packages 
-#
-# We'd prefer to use python 3.8 consistently while
-# chasing down problems.
-#
-#      - name: Add conda to system path
-#        run: |
-#          echo $CONDA/bin >> $GITHUB_PATH
       - name: Setup conda
         uses: s-weigand/setup-conda@v1
         with:
@@ -35,16 +24,10 @@ jobs:
           pip install -e .
           pip install coveralls
           conda install -c conda-forge graph-tool
-# 11-Oct-2021: Do not use rdflib 6.0.0 and later, at
-# the moment there's a fatal interaction, probably with ETK.
-# See issues #537 and #538.
-#
-# pip uninstall -y rdflib
-# pip install git+https://github.com/RDFLib/rdflib.git@master
       - name: Run Tests
         run: |
           cd tests
-          coverage run --source=kgtk -m unittest discover      
+          coverage run --source=kgtk --debug=trace -m unittest discover      
       - name: Coverage
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}