Code

Tps init#7

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vaipatel merged 39 commits intomastervaipatel/morphops:masterfrom tps-initvaipatel/morphops:tps-initCopy head branch name to clipboardJan 1, 2019

+410-17

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Commits on Dec 29, 2018

• Add func to calc distances between each lmk in 2 lmk sets. Init some tests for it

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• Import tps funcs upto tps warping, Provide via __init__

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• Commit auto generated summary for tps

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• Reorder modules in sidebar

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• Add pytest-cov to test coverage locally

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• Update docs and local var names

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Commits on Dec 30, 2018

• Do Y stuff later to make clear the independence of L_inv from Y in code.

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• Add a func to return the bending energy matrix of a set of landmarks, apart from tps_coefs.

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• Write some tests for tps.

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• Update README w high-level sumry of ops and tps info, Ren Usage to Usage Examples

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• Rem trailing whitespace

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• Try using tox instead of tox-travis in travis yml

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• Switch back to tox-travis

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• Bump to 0.1.5

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• For numpy ver to be at least 1.10.0, owing to use of matmul.

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• Bump to 0.1.6 (still buggy wrt numpy ver and travis failing, not sure if related)

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• Bump to 0.1.7a0 to test on pypi

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• Rem some stuff frm README to fix rendering issues on GH and PyPi

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• Bump to 0.1.7a1

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Commits on Dec 31, 2018

• Add setup_requires, install_requires to see if it fixes pip issue

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• Bump to 0.1.7a2

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• Use dot instead of matmul

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• Move creating Y_0 above like before.

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• Use np.linalg.solve instead of calculating the inv and matrix multiplying.

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• Use lstsq instead of solve with rcond None to see if it fixes travis

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• Spread multiline string over multiple lines, put pentagons in glob vars.

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• Only test with squares for now, put squares in glob vars.

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• Explicitly raise if L_inv*Y contains NaNs

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• Try sneaking pentagon back into warp test

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• Bump to 0.1.7a3

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• Rem py3.5 from test, Require mkl for install

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Commits on Jan 1, 2019

• Rem mkl, just test on osx for the moment

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• Rem 3.7 from travis bcoz does not exist on osx apparently

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• Rem os osx

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• Bump to 0.1.7a4

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• Bite bullet and switch back to square.

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• Bring back 3.5 and 3.7 for now.

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• Include README_for_docs instead of README in the index.rst for docs.

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• Bump to 0.1.7

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