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Mobile Site Development #535

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Mobile Site Development #535

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a13xk13m
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Includes frontend and data pipeline updates.

a13xk13m added 7 commits April 7, 2022 17:29
* CORS fix. Blanket CORS on all routes, can be changed if some API endpoints should be publicly accessible.

* Added covidcg.org default url to CORS for safety

* Fixed tooltip rebuilds on mode switches.

* New mobile commits

* Globe spec

* Mobile components - globe implementation

* Vega Specs fixes for globe

* Vega wrappers

* Added data to globe, need to work on scale of colors to show differences.

* Work on sequences per country migration to mobile

* Added snakemake and script to create dominant sequence data

* Fixed mobile data dominant sequence creation

* Added fixes for country/region/province consistence.

* Snakemake work

* Fixed dominant sequences hierarchical index issue

* Fixed data script

* Scrolling map implementation

* Scrolling map implementation

* Fixed scrolling map scale and added static dominant sequence heatmap.

* sequnce map for mobile

* Added surveillance stacked bar chart spec

* Updated stacks

* Added surveillance graph mode to plot settings store

* Added graph mode switch option from line to stacked bar

* Added tooltip to stacked plot

* Set to stacked bar mode only

* Shifted bars to the right so chart is in line

* Fixed stacking problems

* Fixed hover

* Delete MobileGlobalSeqPlot.js

* Fixed hover

* Update config_genbank_example.yaml

* Delete MobileHomePage.js

* Delete MobileHomePage.styles.js

* Update HomePage.js

* Delete SpinningGlobeSequences.js

* Delete map_scores.js

* Delete mobile_dominant_heatmap.vg.json

* Delete mobile_global_seq_map.vg.json

* Delete spinning_globe_seq.vg.json

* Delete spinning_globe_seq_standalone.vg.json

* Delete dominant_sequences.py

* Update Snakefile

* Update docker-compose.yml

* Delete index.html

* Update query.py

* Update HomePage.js

* Delete dominant_sequences.json

* Fixed double surveillance plots
@atc3 atc3 mentioned this pull request Jan 5, 2023
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