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add a test ci (#16) #3

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add a test ci (#16)

add a test ci (#16) #3

Triggered via push August 29, 2024 13:59
@rcannoodrcannood
pushed 956d499
main
Status Failure
Total duration 22m 42s
Artifacts –

test.yaml

on: push
test  /  List components to test
43s
test / List components to test
Matrix: test / Test
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49 errors
test / Test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/, bash_script, multiqc)
Process completed with exit code 1.
test / Test (gunzip, src/gunzip/config.vsh.yaml, src/gunzip/, bash_script, gunzip)
Process completed with exit code 1.
test / Test (cat_fastq, src/cat_fastq/config.vsh.yaml, src/cat_fastq/, bash_script, cat_fastq)
Process completed with exit code 1.
test / Test (gtf2bed, src/gtf2bed/config.vsh.yaml, src/gtf2bed/, bash_script, gtf2bed)
Process completed with exit code 1.
test / Test (bbmap_bbsplit, src/bbmap_bbsplit/config.vsh.yaml, src/bbmap_bbsplit/, bash_script, bbmap_bb...
Process completed with exit code 1.
test / Test (kallisto_quant, kallisto, src/kallisto/kallisto_quant/config.vsh.yaml, src/kallisto/kallist...
Process completed with exit code 1.
test / Test (bedclip, ucsc, src/ucsc/bedclip/config.vsh.yaml, src/ucsc/bedclip/, bash_script, ucsc/bedclip)
Process completed with exit code 1.
test / Test (gffread, src/gffread/config.vsh.yaml, src/gffread/, bash_script, gffread)
Process completed with exit code 1.
test / Test (deseq2_qc, src/deseq2_qc/config.vsh.yaml, src/deseq2_qc/, bash_script, deseq2_qc)
Process completed with exit code 1.
test / Test (cat_additional_fasta, src/cat_additional_fasta/config.vsh.yaml, src/cat_additional_fasta/, ...
Process completed with exit code 1.
test / Test (kallisto_index, kallisto, src/kallisto/kallisto_index/config.vsh.yaml, src/kallisto/kallist...
Process completed with exit code 1.
test / Test (fq_subsample, src/fq_subsample/config.vsh.yaml, src/fq_subsample/, bash_script, fq_subsample)
Process completed with exit code 1.
test / Test (getchromsizes, src/getchromsizes/config.vsh.yaml, src/getchromsizes/, bash_script, getchrom...
Process completed with exit code 1.
test / Test (bedtools_genomecov, src/bedtools_genomecov/config.vsh.yaml, src/bedtools_genomecov/, bash_s...
Process completed with exit code 1.
test / Test (gtf_filter, src/gtf_filter/config.vsh.yaml, src/gtf_filter/, python_script, gtf_filter)
Process completed with exit code 1.
test / Test (featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/, bash_script, featurec...
Process completed with exit code 1.
test / Test (bedgraphtobigwig, ucsc, src/ucsc/bedgraphtobigwig/config.vsh.yaml, src/ucsc/bedgraphtobigwi...
Process completed with exit code 1.
test / Test (fastqc, src/fastqc/config.vsh.yaml, src/fastqc/, bash_script, fastqc)
Process completed with exit code 1.
test / Test (preprocess_transcripts_fasta, src/preprocess_transcripts_fasta/config.vsh.yaml, src/preproc...
Process completed with exit code 1.
test / Test (preseq_lcextrap, src/preseq_lcextrap/config.vsh.yaml, src/preseq_lcextrap/, bash_script, pr...
Process completed with exit code 1.
test / Test (picard_markduplicates, src/picard_markduplicates/config.vsh.yaml, src/picard_markduplicates...
Process completed with exit code 1.
test / Test (qualimap, src/qualimap/config.vsh.yaml, src/qualimap/, bash_script, qualimap)
Process completed with exit code 1.
test / Test (rsem_merge_counts, rsem, src/rsem/rsem_merge_counts/config.vsh.yaml, src/rsem/rsem_merge_co...
Process completed with exit code 1.
test / Test (dupradar, src/dupradar/config.vsh.yaml, src/dupradar/, bash_script, dupradar)
Process completed with exit code 1.
test / Test (rseqc_inferexperiment, rseqc, src/rseqc/rseqc_inferexperiment/config.vsh.yaml, src/rseqc/rs...
Process completed with exit code 1.
test / Test (rsem_prepare_reference, rsem, src/rsem/rsem_prepare_reference/config.vsh.yaml, src/rsem/rse...
Process completed with exit code 1.
test / Test (rseqc_readduplication, rseqc, src/rseqc/rseqc_readduplication/config.vsh.yaml, src/rseqc/rs...
Process completed with exit code 1.
test / Test (rseqc_junctionsaturation, rseqc, src/rseqc/rseqc_junctionsaturation/config.vsh.yaml, src/rs...
Process completed with exit code 1.
test / Test (rseqc_bamstat, rseqc, src/rseqc/rseqc_bamstat/config.vsh.yaml, src/rseqc/rseqc_bamstat/, ba...
Process completed with exit code 1.
test / Test (rsem_calculate_expression, rsem, src/rsem/rsem_calculate_expression/config.vsh.yaml, src/rs...
Process completed with exit code 1.
test / Test (rseqc_tin, rseqc, src/rseqc/tin/config.vsh.yaml, src/rseqc/tin/, bash_script, rseqc/rseqc_tin)
Process completed with exit code 1.
test / Test (rseqc_innerdistance, rseqc, src/rseqc/rseqc_innerdistance/config.vsh.yaml, src/rseqc/rseqc_...
Process completed with exit code 1.
test / Test (rseqc_readdistribution, rseqc, src/rseqc/rseqc_readdistribution/config.vsh.yaml, src/rseqc/...
Process completed with exit code 1.
test / Test (salmon_index, salmon, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/, ba...
Process completed with exit code 1.
test / Test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/, ba...
Process completed with exit code 1.
test / Test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/samtool...
Process completed with exit code 1.
test / Test (rseqc_junctionannotation, rseqc, src/rseqc/rseqc_junctionannotation/config.vsh.yaml, src/rs...
Process completed with exit code 1.
test / Test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samtools/s...
Process completed with exit code 1.
test / Test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/samtools_...
Process completed with exit code 1.
test / Test (samtools_index, samtools, src/samtools/samtools_index/config.vsh.yaml, src/samtools/samtool...
Process completed with exit code 1.
test / Test (samtools_flagstat, samtools, src/samtools/samtools_flagstat/config.vsh.yaml, src/samtools/s...
Process completed with exit code 1.
test / Test (star_align, star, src/star/star_align/config.vsh.yaml, src/star/star_align/, bash_script, s...
Process completed with exit code 1.
test / Test (stringtie, src/stringtie/config.vsh.yaml, src/stringtie/, bash_script, stringtie)
Process completed with exit code 1.
test / Test (sortmerna, src/sortmerna/config.vsh.yaml, src/sortmerna/, bash_script, sortmerna)
Process completed with exit code 1.
test / Test (star_genomegenerate, star, src/star/star_genomegenerate/config.vsh.yaml, src/star/star_geno...
Process completed with exit code 1.
test / Test (umitools_dedup, umitools, src/umitools/umitools_dedup/config.vsh.yaml, src/umitools/umitool...
Process completed with exit code 1.
test / Test (untar, src/untar/config.vsh.yaml, src/untar/, bash_script, untar)
Process completed with exit code 1.
test / Test (umitools_extract, umitools, src/umitools/umitools_extract/config.vsh.yaml, src/umitools/umi...
Process completed with exit code 1.
test / Test (trimgalore, src/trimgalore/config.vsh.yaml, src/trimgalore/, bash_script, trimgalore)
Process completed with exit code 1.