add fastp dependecy from viash hub biobase

viash-hub · Apr 2, 2024 · b1d94aa · b1d94aa
1 parent bb7ac70
commit b1d94aa
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/src/workflows/pre_processing/config.vsh.yaml b/src/workflows/pre_processing/config.vsh.yaml
@@ -270,10 +270,9 @@ functionality:
     - name: bbmap_bbsplit
     - name: sortmerna
     - name: fastp
-      # repository: 
-      #   type: vsh
-      #   repo: viash-hub/biobase
-      #   path: target/nextflow/
+      repository: 
+        type: vsh
+        repo: viash-hub/biobase
 
 platforms:
   - type: nextflow
diff --git a/src/workflows/pre_processing/main.nf b/src/workflows/pre_processing/main.nf
@@ -106,7 +106,7 @@ workflow run_wf {
         "trim_json": "json",
         "trim_html": "html",
         "trim_merged_out": "merged_out"
-      ],
+      ]
     )
 
     // Perform FASTQC on reads trimmed using fastp