update wf #2
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| name: Test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| jobs: | |
| # phase 1 | |
| list: | |
| name: List components to test | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.ns_list_filter_nextflow.outputs.output_matrix }} | |
| cache_key: ${{ steps.cache.outputs.cache_key }} | |
| dest_paths: ${{ steps.cache.outputs.dest_paths }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| submodules: 'recursive' | |
| - uses: viash-io/viash-actions/setup@v6 | |
| - uses: viash-io/viash-actions/project/sync-and-cache@v6 | |
| id: cache | |
| - id: ns_list | |
| uses: viash-io/viash-actions/ns-list@v6 | |
| with: | |
| format: json | |
| runner: executable | |
| - id: ns_list_filter_changed | |
| uses: viash-io/viash-actions/project/detect-changed-components@v6 | |
| with: | |
| input_file: "${{ steps.ns_list.outputs.output_file }}" | |
| - name: Filter out Nextflow scripts (testing currently not supported) | |
| id: ns_list_filter_nextflow | |
| run: | | |
| OUTPUT_MATRIX=$(echo '${{ steps.ns_list_filter_changed.outputs.output_matrix }}' | jq -c 'map(select(.main_script_type != "nextflow_script"))') | |
| echo "output_matrix=$OUTPUT_MATRIX" >> $GITHUB_OUTPUT | |
| # phase 2 | |
| test: | |
| name: Test | |
| needs: list | |
| if: ${{ needs.list.outputs.matrix != '[]' && needs.list.outputs.matrix != '' }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| component: ${{ fromJson(needs.list.outputs.matrix) }} | |
| steps: | |
| # Remove unnecessary files to free up space. Otherwise, we get 'no space left on device.' | |
| - name: Clear space | |
| uses: data-intuitive/reclaim-the-bytes@v2 | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 | |
| - name: Install Viash | |
| uses: viash-io/viash-actions/setup@v6 | |
| # use cache | |
| - name: Cache resources data | |
| if: ${{ needs.list.outputs.cache_key != '' }} | |
| uses: actions/cache/restore@v4 | |
| timeout-minutes: 10 | |
| with: | |
| path: ${{ needs.list.outputs.dest_paths }} | |
| key: ${{ needs.list.outputs.cache_key }} | |
| - name: Run test | |
| timeout-minutes: 30 | |
| env: | |
| VIASH_TEMP: "${{ runner.temp }}/viash_test_temp" | |
| run: | | |
| viash test \ | |
| "${{ matrix.component.config }}" \ | |
| --cpus 2 \ | |
| --memory "16gb" |