Bump version to 0.2.2

_viash.yaml

@@ -4,7 +4,7 @@ source: src
 target: target
 
 config_mods: |
-  .functionality.version := '0.2.1'
+  .functionality.version := '0.2.2'
   .platforms[.type == 'docker'].target_registry := 'ghcr.io'
   .platforms[.type == 'docker'].target_organization := 'viash-io/viash_project_template'
   .platforms[.type == 'docker'].target_image_source := 'https://github.com/viash-io/viash_project_template'

src/template/take_column/config.vsh.yaml

@@ -23,5 +23,9 @@ platforms:
     image: python:3.10-slim
     setup:
       - type: python
-        packages: pandas
+        packages: 
+          - pandas
+      - type: apt
+        packages: 
+          - procps
   - type: nextflow

target/docker/template/combine_columns/.config.vsh.yaml

@@ -1,7 +1,7 @@
 functionality:
   name: "combine_columns"
   namespace: "template"
-  version: "0.2.1"
+  version: "0.2.2"
   arguments:
   - type: "file"
     name: "--input"
@@ -96,6 +96,6 @@ info:
   output: "/Users/toni/code/projects/viash/viash_project_template/target/docker/template/combine_columns"
   executable: "/Users/toni/code/projects/viash/viash_project_template/target/docker/template/combine_columns/combine_columns"
   viash_version: "0.8.4"
-  git_commit: "3c5a6ec5a23ea032316a60d141c9083dd78936c1"
+  git_commit: "11b6278597bf22afbfb56a8e83065a55553c9dd0"
   git_remote: "https://github.com/viash-io/viash_project_template"
-  git_tag: "v0.2.0"
+  git_tag: "v0.2.1"

target/docker/template/combine_columns/combine_columns

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# combine_columns 0.2.1
+# combine_columns 0.2.2
 # 
 # This wrapper script is auto-generated by viash 0.8.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "combine_columns 0.2.1"
+  echo "combine_columns 0.2.2"
   echo ""
   echo "Arguments:"
   echo "    -i, --input"
@@ -402,10 +402,10 @@ ENTRYPOINT []
  
 RUN :
 LABEL org.opencontainers.image.description="Companion container for running component template combine_columns"
-LABEL org.opencontainers.image.created="2024-01-16T10:52:12+01:00"
+LABEL org.opencontainers.image.created="2024-01-16T14:48:43+01:00"
 LABEL org.opencontainers.image.source="https://github.com/viash-io/viash_project_template"
-LABEL org.opencontainers.image.revision="3c5a6ec5a23ea032316a60d141c9083dd78936c1"
-LABEL org.opencontainers.image.version="0.2.1"
+LABEL org.opencontainers.image.revision="11b6278597bf22afbfb56a8e83065a55553c9dd0"
+LABEL org.opencontainers.image.version="0.2.2"
 
 VIASHDOCKER
 }
@@ -556,7 +556,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "combine_columns 0.2.1"
+            echo "combine_columns 0.2.2"
             exit
             ;;
         --input)
@@ -666,14 +666,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2'
   exit 0
 fi
 
@@ -854,7 +854,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -873,8 +873,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.1
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/combine_columns:0.2.2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-combine_columns-XXXXXX").R
 function clean_up {

target/docker/template/remove_comments/.config.vsh.yaml

@@ -1,7 +1,7 @@
 functionality:
   name: "remove_comments"
   namespace: "template"
-  version: "0.2.1"
+  version: "0.2.2"
   arguments:
   - type: "file"
     name: "--input"
@@ -104,6 +104,6 @@ info:
   output: "/Users/toni/code/projects/viash/viash_project_template/target/docker/template/remove_comments"
   executable: "/Users/toni/code/projects/viash/viash_project_template/target/docker/template/remove_comments/remove_comments"
   viash_version: "0.8.4"
-  git_commit: "3c5a6ec5a23ea032316a60d141c9083dd78936c1"
+  git_commit: "11b6278597bf22afbfb56a8e83065a55553c9dd0"
   git_remote: "https://github.com/viash-io/viash_project_template"
-  git_tag: "v0.2.0"
+  git_tag: "v0.2.1"

target/docker/template/remove_comments/remove_comments

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# remove_comments 0.2.1
+# remove_comments 0.2.2
 # 
 # This wrapper script is auto-generated by viash 0.8.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "remove_comments 0.2.1"
+  echo "remove_comments 0.2.2"
   echo ""
   echo "Arguments:"
   echo "    -i, --input"
@@ -404,10 +404,10 @@ ENTRYPOINT []
  
 RUN :
 LABEL org.opencontainers.image.description="Companion container for running component template remove_comments"
-LABEL org.opencontainers.image.created="2024-01-16T10:52:07+01:00"
+LABEL org.opencontainers.image.created="2024-01-16T14:48:39+01:00"
 LABEL org.opencontainers.image.source="https://github.com/viash-io/viash_project_template"
-LABEL org.opencontainers.image.revision="3c5a6ec5a23ea032316a60d141c9083dd78936c1"
-LABEL org.opencontainers.image.version="0.2.1"
+LABEL org.opencontainers.image.revision="11b6278597bf22afbfb56a8e83065a55553c9dd0"
+LABEL org.opencontainers.image.version="0.2.2"
 
 VIASHDOCKER
 }
@@ -558,7 +558,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "remove_comments 0.2.1"
+            echo "remove_comments 0.2.2"
             exit
             ;;
         --input)
@@ -659,14 +659,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2'
   exit 0
 fi
 
@@ -832,7 +832,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -851,8 +851,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.1
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/remove_comments:0.2.2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-remove_comments-XXXXXX").sh
 function clean_up {

target/docker/template/take_column/.config.vsh.yaml

@@ -1,7 +1,7 @@
 functionality:
   name: "take_column"
   namespace: "template"
-  version: "0.2.1"
+  version: "0.2.2"
   arguments:
   - type: "file"
     name: "--input"
@@ -61,6 +61,10 @@ platforms:
     packages:
     - "pandas"
     upgrade: true
+  - type: "apt"
+    packages:
+    - "procps"
+    interactive: false
   entrypoint: []
   cmd: null
 - type: "nextflow"
@@ -112,6 +116,6 @@ info:
   output: "/Users/toni/code/projects/viash/viash_project_template/target/docker/template/take_column"
   executable: "/Users/toni/code/projects/viash/viash_project_template/target/docker/template/take_column/take_column"
   viash_version: "0.8.4"
-  git_commit: "3c5a6ec5a23ea032316a60d141c9083dd78936c1"
+  git_commit: "11b6278597bf22afbfb56a8e83065a55553c9dd0"
   git_remote: "https://github.com/viash-io/viash_project_template"
-  git_tag: "v0.2.0"
+  git_tag: "v0.2.1"

target/docker/template/take_column/take_column

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# take_column 0.2.1
+# take_column 0.2.2
 # 
 # This wrapper script is auto-generated by viash 0.8.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -170,7 +170,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "take_column 0.2.1"
+  echo "take_column 0.2.2"
   echo ""
   echo "Arguments:"
   echo "    -i, --input"
@@ -407,11 +407,15 @@ ENTRYPOINT []
 RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "pandas"
 
+RUN apt-get update && \
+  DEBIAN_FRONTEND=noninteractive apt-get install -y procps && \
+  rm -rf /var/lib/apt/lists/*
+
 LABEL org.opencontainers.image.description="Companion container for running component template take_column"
-LABEL org.opencontainers.image.created="2024-01-16T10:52:16+01:00"
+LABEL org.opencontainers.image.created="2024-01-16T14:48:47+01:00"
 LABEL org.opencontainers.image.source="https://github.com/viash-io/viash_project_template"
-LABEL org.opencontainers.image.revision="3c5a6ec5a23ea032316a60d141c9083dd78936c1"
-LABEL org.opencontainers.image.version="0.2.1"
+LABEL org.opencontainers.image.revision="11b6278597bf22afbfb56a8e83065a55553c9dd0"
+LABEL org.opencontainers.image.version="0.2.2"
 
 VIASHDOCKER
 }
@@ -562,7 +566,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "take_column 0.2.1"
+            echo "take_column 0.2.2"
             exit
             ;;
         --input)
@@ -674,14 +678,14 @@ eval set -- $VIASH_POSITIONAL_ARGS
 ViashDockerInstallationCheck
 
 if [ $VIASH_MODE == "docker_setup" ]; then
-  ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1' "$VIASH_DOCKER_SETUP_STRATEGY"
+  ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2' "$VIASH_DOCKER_SETUP_STRATEGY"
   exit 0
 fi
-ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1' ifneedbepullelsecachedbuild
+ViashDockerSetup 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2' ifneedbepullelsecachedbuild
 
 if [ $VIASH_MODE == "docker_debug" ]; then
-  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1'"
-  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1'
+  ViashNotice "+ docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2'"
+  docker run --entrypoint=bash -i --rm -v "$(pwd)":/pwd --workdir /pwd -t 'ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2'
   exit 0
 fi
 
@@ -858,7 +862,7 @@ VIASH_UNIQUE_MOUNTS=($(for val in "${VIASH_EXTRA_MOUNTS[@]}"; do echo "$val"; do
 function ViashPerformChown {
   if (( ${#VIASH_CHOWN_VARS[@]} )); then
     set +e
-    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
+    eval docker run --entrypoint=chown -i --rm ${VIASH_UNIQUE_MOUNTS[@]} ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2 "$(id -u):$(id -g)" --silent --recursive ${VIASH_CHOWN_VARS[@]}
     set -e
   fi
 }
@@ -877,8 +881,8 @@ fi
 # set dependency paths
 
 
-ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1)"
-cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/take_column:0.2.1
+ViashDebug "Running command: $(echo docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2)"
+cat << VIASHEOF | eval docker run --entrypoint=bash -i --rm ${VIASH_UNIQUE_MOUNTS[@]} $VIASH_EXTRA_DOCKER_ARGS ghcr.io/viash-io/viash_project_template/template/take_column:0.2.2
 set -e
 tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-take_column-XXXXXX").py
 function clean_up {

target/nextflow/template/combine_columns/.config.vsh.yaml

@@ -1,7 +1,7 @@
 functionality:
   name: "combine_columns"
   namespace: "template"
-  version: "0.2.1"
+  version: "0.2.2"
   arguments:
   - type: "file"
     name: "--input"
@@ -96,6 +96,6 @@ info:
   output: "/Users/toni/code/projects/viash/viash_project_template/target/nextflow/template/combine_columns"
   executable: "/Users/toni/code/projects/viash/viash_project_template/target/nextflow/template/combine_columns/combine_columns"
   viash_version: "0.8.4"
-  git_commit: "3c5a6ec5a23ea032316a60d141c9083dd78936c1"
+  git_commit: "11b6278597bf22afbfb56a8e83065a55553c9dd0"
   git_remote: "https://github.com/viash-io/viash_project_template"
-  git_tag: "v0.2.0"
+  git_tag: "v0.2.1"

target/nextflow/template/combine_columns/main.nf

@@ -1,4 +1,4 @@
-// combine_columns 0.2.1
+// combine_columns 0.2.2
 // 
 // This wrapper script is auto-generated by viash 0.8.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2771,7 +2771,7 @@ meta = [
   "functionality" : {
     "name" : "combine_columns",
     "namespace" : "template",
-    "version" : "0.2.1",
+    "version" : "0.2.2",
     "arguments" : [
       {
         "type" : "file",
@@ -2881,9 +2881,9 @@ meta = [
     "platform" : "nextflow",
     "output" : "/Users/toni/code/projects/viash/viash_project_template/target/nextflow/template/combine_columns",
     "viash_version" : "0.8.4",
-    "git_commit" : "3c5a6ec5a23ea032316a60d141c9083dd78936c1",
+    "git_commit" : "11b6278597bf22afbfb56a8e83065a55553c9dd0",
     "git_remote" : "https://github.com/viash-io/viash_project_template",
-    "git_tag" : "v0.2.0"
+    "git_tag" : "v0.2.1"
   }
 }'''))
 ]
@@ -3288,7 +3288,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "viash-io/viash_project_template/template/combine_columns",
-    "tag" : "0.2.1"
+    "tag" : "0.2.2"
   },
   "tag" : "$id"
 }'''),

target/nextflow/template/combine_columns/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'template/combine_columns'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = '0.2.1'
+  version = '0.2.2'
 }
 
 process.container = 'nextflow/bash:latest'