-->
{
"@context": "https://schema.org/",
"@type": "LearningResource",
"@id": "https://elixir-europe-training.github.io/ELIXIR-TrP-TeSS/",
"http://purl.org/dc/terms/conformsTo": {
"@type": "CreativeWork",
"@id": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE"
},
"description": "TeSS, how can I help you? This is our interactive hands-on course about efficient use of the ELIXIR TeSS platform.",
"keywords": "FAIR, OPEN, Bioinformatics, Teaching, TeSS",
"name": "TeSS, how can I help you?",
"license": "https://creativecommons.org/licenses/by/4.0/",
"educationalLevel": "beginner",
"competencyRequired": "none",
"teaches": [
"search events and material in TeSS via direct and faceted search",
"add manually and automatically events and material to TeSS",
"extract events and material from TeSS by using TeSS widgets"
],
"audience": "training providers",
"inLanguage": "en-US",
"learningResourceType": [
"tutorial"
],
"author": [
{
"@type": "Person",
"name": "Bruna Piereck"
},
{
"@type": "Person",
"name": "Olivier Sand"
},
{
"@type": "Person",
"name": "Alexander Botzki"
}
],
"contributor": [
{
"@type": "Person",
"name": "Yasmine Maes"
},
{
"@type": "Person",
"name": "Finn Bacall"
},
{
"@type": "Person",
"name": "Munazah Andrabi"
}
]
}Hello and welcome to our @tutor workshop! We are very happy to have you here.
This is the @edition edition of this workshop, jointly organised by your organisation and ELIXIR.
Example image to ilustrate the front page of the material. This image was Designed by macrovector / Freepik
We are using the interactive Open Educational Resource online/offline course infrastructure called LiaScript. It is a distributed way of creating and sharing educational content hosted on github. To see this document as an interactive LiaScript rendered version, click on the following link/badge: LiaScript
Welcome to our {{workshop_name}} workshop! We are very happy to have you here.
This is the {{workshop_edition}} edition of this workshop, jointly organised by the VIB Bioinformatics Core and ELIXIR Belgium.
- The first session (12 & 13 October 2023) is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers.
The presentation which goes alongside this material can be found here.
Schedule day 1:
- 9:30 - 11:00 - session
- 11:00 - 11:15 - break
- 11:15 - 12:45 - session
- 12:45 - 13:45 - lunch
- 13:45 - 15:15 - session
- 15:15 - 15:30 - break
- 15:30 - 17:00 - session
License: Creative Commons Attribution share alike 4.0 International License
Target Audience: Researchers, trainers, training providers
Level: Beginner
Prerequisites
To be able to follow this course, learners should have knowledge in:
- Basic knowlegde of HTML
- Basic knowledge of ...
- Being comfortable working with ....
Description This course consist of .....
Learning Outcomes:
By the end of the course, learners will be able to:
Define what ..... [Remembering]
Discuss and explain ..... [Understanding]
Apply and modify ..... [Applying]
Compare ..... [Analysing]
Evaluate and select ..... [Evaluating]
Create and integrate ..... [Creating]
Check more about Bloom's taxonomy to categorize the levels in educational goals
Time estimation: 120 minutes
Requirements: The (technical) installation requirements are described in the installations section.
Supporting Materials:
Acknowledgement:
Funding: This project has received funding from the ELIXIR Programme 2022-2023.
PURL:
Authors
- [Name](@orcid
Contributors
- Name
- Name
- Name
Please cite as:
- ...
| Chapter | Title |
|---|---|
| 0 | Get ready for the course, instalation and pre-reading |
| 1 | Chapter title |
| 2 | Chapter title |
| 3 | Chapter title |
Here are some great tips for learning and to get inspired for writing your own pipelines:
- Nextflow's official documentation (link)
- Reach out to the community on Slack (link)
- Curated collection of patterns (link)
- Workshop focused on DSL2 developed by CRG Bioinformatics Core (link)
- Tutorial exercises (DSL1) developed by Seqera (link)
- Curated ready-to-use analysis pipelines by NF-core (link)
- Model example pipeline on Variant Calling Analysis with NGS RNA-Seq data developed by CRG (link)
- Tutorial by Andrew Severin (link)
- Nextflow community basic training (link)
About ELIXIR Training Platform
The ELIXIR Training Platform was established to develop a training community that spans all ELIXIR member states (see the list of Training Coordinators). It aims to strengthen national training programmes, grow bioinformatics training capacity and competence across Europe, and empower researchers to use ELIXIR's services and tools.
One service offered by the Training Platform is TeSS, the training registry for the ELIXIR community. Together with ELIXIR France and ELIXIR Slovenia, VIB as lead node for ELIXIR Belgium is engaged in consolidating quality and impact of the TeSS training resources (2022-23) (https://elixir-europe.org/internal-projects/commissioned-services/2022-trp3).
The Training eSupport System was developed to help trainees, trainers and their institutions to have a one-stop shop where they can share and find information about training and events, including training material. This way we can create a catalogue that can be shared within the community. How it works is what we are going to find out in this course.
About VIB and VIB Technologies
VIB is an entrepreneurial non-profit research institute, with a clear focus on groundbreaking strategic basic research in life sciences and operates in close partnership with the five universities in Flanders – Ghent University, KU Leuven, University of Antwerp, Vrije Universiteit Brussel and Hasselt University.
As part of the VIB Technologies, the 12 VIB Core Facilities, provide support in a wide array of research fields and housing specialized scientific equipment for each discipline. Science and technology go hand in hand. New technologies advance science and often accelerate breakthroughs in scientific research. VIB has a visionary approach to science and technology, founded on its ability to identify and foster new innovations in life sciences.
The goal of VIB Technology Training is to up-skill life scientists to excel in the domains of VIB Technologies, Bioinformatics & AI, Software Development, and Research Data Management.
Editorial team for this course
Authors: @orcid(Alexander Botzki), @orcid(Bruna Piereck)
Technical Editors: Alexander Botzki
License: 