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vkola-lab · Jun 10, 2024 · 3a9e785 · 3a9e785
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-4b7a5fc8
+961610b2
diff --git a/about.html b/about.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.553">
+<meta name="generator" content="quarto-1.4.555">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -146,58 +146,58 @@
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true">
- <span class="menu-text">Working in the lab</span></a>
+            <a href="./projects/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Projects</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./practical/data_organization.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Data Organization</span></a>
+  <a href="./projects/adrd.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ADRD</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./practical/MRI.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Working with MRIs</span></a>
+  <a href="./projects/neurogpt.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">NeuroGPT</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./practical/workstations.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Workstations</span></a>
+  <a href="./projects/neuropath.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Neuropath stuff</span></a>
   </div>
 </li>
       </ul>
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a href="./projects/index.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Projects</span></a>
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true">
+ <span class="menu-text">Working in the lab</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-3" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./projects/adrd.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">ADRD</span></a>
+  <a href="./practical/data_organization.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data Organization</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./projects/neurogpt.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">NeuroGPT</span></a>
+  <a href="./practical/MRI.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Working with MRIs</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./projects/neuropath.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Neuropath stuff</span></a>
+  <a href="./practical/workstations.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Workstations</span></a>
   </div>
 </li>
       </ul>
@@ -485,7 +485,7 @@ <h1>Quarto and VS Code</h1>
   });
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/mbellitti\.github\.io\/kolachalama-docs\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/datasets/A4.html b/datasets/A4.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.553">
+<meta name="generator" content="quarto-1.4.555">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -146,58 +146,58 @@
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true">
- <span class="menu-text">Working in the lab</span></a>
+            <a href="../projects/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Projects</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../practical/data_organization.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Data Organization</span></a>
+  <a href="../projects/adrd.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ADRD</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../practical/MRI.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Working with MRIs</span></a>
+  <a href="../projects/neurogpt.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">NeuroGPT</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../practical/workstations.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Workstations</span></a>
+  <a href="../projects/neuropath.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Neuropath stuff</span></a>
   </div>
 </li>
       </ul>
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a href="../projects/index.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Projects</span></a>
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true">
+ <span class="menu-text">Working in the lab</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-3" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../projects/adrd.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">ADRD</span></a>
+  <a href="../practical/data_organization.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data Organization</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../projects/neurogpt.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">NeuroGPT</span></a>
+  <a href="../practical/MRI.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Working with MRIs</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../projects/neuropath.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Neuropath stuff</span></a>
+  <a href="../practical/workstations.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Workstations</span></a>
   </div>
 </li>
       </ul>
@@ -445,7 +445,7 @@
   });
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/mbellitti\.github\.io\/kolachalama-docs\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/datasets/ADNI.html b/datasets/ADNI.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.553">
+<meta name="generator" content="quarto-1.4.555">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -146,58 +146,58 @@
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true">
- <span class="menu-text">Working in the lab</span></a>
+            <a href="../projects/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Projects</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../practical/data_organization.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Data Organization</span></a>
+  <a href="../projects/adrd.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ADRD</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../practical/MRI.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Working with MRIs</span></a>
+  <a href="../projects/neurogpt.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">NeuroGPT</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../practical/workstations.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Workstations</span></a>
+  <a href="../projects/neuropath.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Neuropath stuff</span></a>
   </div>
 </li>
       </ul>
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a href="../projects/index.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Projects</span></a>
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true">
+ <span class="menu-text">Working in the lab</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-3" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../projects/adrd.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">ADRD</span></a>
+  <a href="../practical/data_organization.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data Organization</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../projects/neurogpt.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">NeuroGPT</span></a>
+  <a href="../practical/MRI.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Working with MRIs</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../projects/neuropath.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Neuropath stuff</span></a>
+  <a href="../practical/workstations.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Workstations</span></a>
   </div>
 </li>
       </ul>
@@ -462,7 +462,7 @@ <h1 class="title">ADNI Documentation</h1>
   });
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/mbellitti\.github\.io\/kolachalama-docs\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/index.html b/index.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.553">
+<meta name="generator" content="quarto-1.4.555">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -146,58 +146,58 @@
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true">
- <span class="menu-text">Working in the lab</span></a>
+            <a href="./projects/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Projects</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./practical/data_organization.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Data Organization</span></a>
+  <a href="./projects/adrd.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">ADRD</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./practical/MRI.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Working with MRIs</span></a>
+  <a href="./projects/neurogpt.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">NeuroGPT</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./practical/workstations.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Workstations</span></a>
+  <a href="./projects/neuropath.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Neuropath stuff</span></a>
   </div>
 </li>
       </ul>
   </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a href="./projects/index.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Projects</span></a>
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true">
+ <span class="menu-text">Working in the lab</span></a>
           <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
       <ul id="quarto-sidebar-section-3" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./projects/adrd.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">ADRD</span></a>
+  <a href="./practical/data_organization.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data Organization</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./projects/neurogpt.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">NeuroGPT</span></a>
+  <a href="./practical/MRI.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Working with MRIs</span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./projects/neuropath.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Neuropath stuff</span></a>
+  <a href="./practical/workstations.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Workstations</span></a>
   </div>
 </li>
       </ul>
@@ -463,7 +463,7 @@ <h1 class="title">Introduction</h1>
   });
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/mbellitti\.github\.io\/kolachalama-docs\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }