- Clone the project repo
cd
the project root directory- Create a Python virtual environment
- install project with
pip install -e .
- download LGMR data
- Run scripts or notebooks in the virtual environment.
src
defined some source code for data processing, analysis and visulization,
including two packages which can be installed by pip insatll -e .
: lgmr_em
for some data processing and analysis utils,
and eigen_microstates
for implementaion of eigen microstates.
notebooks/em_decomposition
is the main notebook for data analysis and visualization.
scripts
are essentially some extra scripts for plotting some figures in supplementary info.