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Clean-up and refactor new benchmarks (#1110)
* remove wasm_kernel git submodule * re-add revcomp txt input and expected output * make benchmarks compile again * add revcomp and reg-redux translation benchmarks * add instantiation for new Rust based benchmarks * rename bench groups
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[submodule "crates/wasmi/tests/spec/testsuite"] | ||
path = crates/wasmi/tests/spec/testsuite | ||
url = https://github.com/WebAssembly/testsuite.git | ||
[submodule "crates/wasmi/benches/wasm_kernel"] | ||
path = crates/wasmi/benches/wasm/wasm_kernel | ||
url = https://github.com/robbepop/wasm_kernel.git |
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>ONE Homo sapiens alu | ||
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA | ||
TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT | ||
AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG | ||
GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG | ||
CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT | ||
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA | ||
GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA | ||
TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG | ||
AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA | ||
GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT | ||
AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC | ||
AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG | ||
GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC | ||
CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG | ||
AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT | ||
TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA | ||
TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT | ||
GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG | ||
TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT | ||
CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG | ||
CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG | ||
TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA | ||
CTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG | ||
AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG | ||
GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC | ||
TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA | ||
TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA | ||
GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT | ||
GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC | ||
ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT | ||
TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC | ||
CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG | ||
CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG | ||
GGCGACAGAGCGAGACTCCG | ||
>TWO IUB ambiguity codes | ||
cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg | ||
tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa | ||
NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt | ||
cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga | ||
gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa | ||
HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca | ||
tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt | ||
tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt | ||
acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct | ||
tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt | ||
gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa | ||
accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt | ||
RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt | ||
tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag | ||
cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg | ||
ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat | ||
actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg | ||
YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa | ||
KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata | ||
aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa | ||
aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg | ||
gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc | ||
tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK | ||
tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt | ||
ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg | ||
ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa | ||
BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt | ||
aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc | ||
tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc | ||
cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac | ||
aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga | ||
tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga | ||
aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD | ||
gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg | ||
ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV | ||
taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa | ||
ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat | ||
gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg | ||
gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa | ||
tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt | ||
tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt | ||
taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca | ||
cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag | ||
aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt | ||
cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt | ||
ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW | ||
attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag | ||
ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa | ||
attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc | ||
tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta | ||
>THREE Homo sapiens frequency | ||
aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga | ||
atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc | ||
ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc | ||
atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa | ||
tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca | ||
tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag | ||
gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat | ||
tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt | ||
gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc | ||
gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc | ||
atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc | ||
taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta | ||
ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg | ||
acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag | ||
ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg | ||
ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt | ||
cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg | ||
ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt | ||
aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag | ||
attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac | ||
acaatacgggttgagatattaattatttgtagtacgaagagatataaaaagatgaacaat | ||
tactcaagtcaagatgtatacgggatttataataaaaatcgggtagagatctgctttgca | ||
attcagacgtgccactaaatcgtaatatgtcgcgttacatcagaaagggtaactattatt | ||
aattaataaagggcttaatcactacatattagatcttatccgatagtcttatctattcgt | ||
tgtatttttaagcggttctaattcagtcattatatcagtgctccgagttctttattattg | ||
ttttaaggatgacaaaatgcctcttgttataacgctgggagaagcagactaagagtcgga | ||
gcagttggtagaatgaggctgcaaaagacggtctcgacgaatggacagactttactaaac | ||
caatgaaagacagaagtagagcaaagtctgaagtggtatcagcttaattatgacaaccct | ||
taatacttccctttcgccgaatactggcgtggaaaggttttaaaagtcgaagtagttaga | ||
ggcatctctcgctcataaataggtagactactcgcaatccaatgtgactatgtaatactg | ||
ggaacatcagtccgcgatgcagcgtgtttatcaaccgtccccactcgcctggggagacat | ||
gagaccacccccgtggggattattagtccgcagtaatcgactcttgacaatccttttcga | ||
ttatgtcatagcaatttacgacagttcagcgaagtgactactcggcgaaatggtattact | ||
aaagcattcgaacccacatgaatgtgattcttggcaatttctaatccactaaagcttttc | ||
cgttgaatctggttgtagatatttatataagttcactaattaagatcacggtagtatatt | ||
gatagtgatgtctttgcaagaggttggccgaggaatttacggattctctattgatacaat | ||
ttgtctggcttataactcttaaggctgaaccaggcgtttttagacgacttgatcagctgt | ||
tagaatggtttggactccctctttcatgtcagtaacatttcagccgttattgttacgata | ||
tgcttgaacaatattgatctaccacacacccatagtatattttataggtcatgctgttac | ||
ctacgagcatggtattccacttcccattcaatgagtattcaacatcactagcctcagaga | ||
tgatgacccacctctaataacgtcacgttgcggccatgtgaaacctgaacttgagtagac | ||
gatatcaagcgctttaaattgcatataacatttgagggtaaagctaagcggatgctttat | ||
ataatcaatactcaataataagatttgattgcattttagagttatgacacgacatagttc | ||
actaacgagttactattcccagatctagactgaagtactgatcgagacgatccttacgtc | ||
gatgatcgttagttatcgacttaggtcgggtctctagcggtattggtacttaaccggaca | ||
ctatactaataacccatgatcaaagcataacagaatacagacgataatttcgccaacata | ||
tatgtacagaccccaagcatgagaagctcattgaaagctatcattgaagtcccgctcaca | ||
atgtgtcttttccagacggtttaactggttcccgggagtcctggagtttcgacttacata | ||
aatggaaacaatgtattttgctaatttatctatagcgtcatttggaccaatacagaatat | ||
tatgttgcctagtaatccactataacccgcaagtgctgatagaaaatttttagacgattt | ||
ataaatgccccaagtatccctcccgtgaatcctccgttatactaattagtattcgttcat | ||
acgtataccgcgcatatatgaacatttggcgataaggcgcgtgaattgttacgtgacaga | ||
gatagcagtttcttgtgatatggttaacagacgtacatgaagggaaactttatatctata | ||
gtgatgcttccgtagaaataccgccactggtctgccaatgatgaagtatgtagctttagg | ||
tttgtactatgaggctttcgtttgtttgcagagtataacagttgcgagtgaaaaaccgac | ||
gaatttatactaatacgctttcactattggctacaaaatagggaagagtttcaatcatga | ||
gagggagtatatggatgctttgtagctaaaggtagaacgtatgtatatgctgccgttcat | ||
tcttgaaagatacataagcgataagttacgacaattataagcaacatccctaccttcgta | ||
acgatttcactgttactgcgcttgaaatacactatggggctattggcggagagaagcaga | ||
tcgcgccgagcatatacgagacctataatgttgatgatagagaaggcgtctgaattgata | ||
catcgaagtacactttctttcgtagtatctctcgtcctctttctatctccggacacaaga | ||
attaagttatatatatagagtcttaccaatcatgttgaatcctgattctcagagttcttt | ||
ggcgggccttgtgatgactgagaaacaatgcaatattgctccaaatttcctaagcaaatt | ||
ctcggttatgttatgttatcagcaaagcgttacgttatgttatttaaatctggaatgacg | ||
gagcgaagttcttatgtcggtgtgggaataattcttttgaagacagcactccttaaataa | ||
tatcgctccgtgtttgtatttatcgaatgggtctgtaaccttgcacaagcaaatcggtgg | ||
tgtatatatcggataacaattaatacgatgttcatagtgacagtatactgatcgagtcct | ||
ctaaagtcaattacctcacttaacaatctcattgatgttgtgtcattcccggtatcgccc | ||
gtagtatgtgctctgattgaccgagtgtgaaccaaggaacatctactaatgcctttgtta | ||
ggtaagatctctctgaattccttcgtgccaacttaaaacattatcaaaatttcttctact | ||
tggattaactacttttacgagcatggcaaattcccctgtggaagacggttcattattatc | ||
ggaaaccttatagaaattgcgtgttgactgaaattagatttttattgtaagagttgcatc | ||
tttgcgattcctctggtctagcttccaatgaacagtcctcccttctattcgacatcgggt | ||
ccttcgtacatgtctttgcgatgtaataattaggttcggagtgtggccttaatgggtgca | ||
actaggaatacaacgcaaatttgctgacatgatagcaaatcggtatgccggcaccaaaac | ||
gtgctccttgcttagcttgtgaatgagactcagtagttaaataaatccatatctgcaatc | ||
gattccacaggtattgtccactatctttgaactactctaagagatacaagcttagctgag | ||
accgaggtgtatatgactacgctgatatctgtaaggtaccaatgcaggcaaagtatgcga | ||
gaagctaataccggctgtttccagctttataagattaaaatttggctgtcctggcggcct | ||
cagaattgttctatcgtaatcagttggttcattaattagctaagtacgaggtacaactta | ||
tctgtcccagaacagctccacaagtttttttacagccgaaacccctgtgtgaatcttaat | ||
atccaagcgcgttatctgattagagtttacaactcagtattttatcagtacgttttgttt | ||
ccaacattacccggtatgacaaaatgacgccacgtgtcgaataatggtctgaccaatgta | ||
ggaagtgaaaagataaatat |
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