install requires go in setup

wbazant · Apr 1, 2022 · fc8fe5c · fc8fe5c
1 parent 96ce05e
commit fc8fe5c
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Showing 3 changed files with 9 additions and 5 deletions.
diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1 @@
-pysam
-scipy
-numpy
-sklearn
+.
diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 long_description = (this_directory / "README.md").read_text()
 
 setuptools.setup(name='marker_alignments',
-    version='0.4',
+    version='0.4.1',
     description="Process and summarise alignments of metagenomic sequencing reads to reference databases of marker genes",
     long_description = long_description,
     long_description_content_type="text/markdown",
@@ -16,6 +16,7 @@
     entry_points={"console_scripts": [
         "marker_alignments = marker_alignments.main:main",
     ]},
+    install_requires=["pysam", "scipy", "numpy", "sklearn"],
     package_dir={"": "src"},
     packages=setuptools.find_packages(where="src"),
     python_requires=">=3.6",

diff --git a/ship.sh b/ship.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+set -euo pipefail
+tox
+python3 -m build
+python3 -m twine upload dist/*
-Original file line number
+Diff line change
@@ -1,4 +1 @@
-    pysam
-    scipy
-    numpy
-    sklearn
+    .