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Commits on Sep 21, 2021

• Infer query length when not available

  wbazant

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Commits on Sep 20, 2021

• Add average identity as marker output

  wbazant

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• A better test suite for counting results

  wbazant

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Commits on Sep 17, 2021

• A more correct percentage identity function

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Commits on Sep 13, 2021

• Match identity is a float

  wbazant

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• Filter the result on the output columns taxon_num_reads and taxon_num_markers

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• Read / alignment based filters

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• One interface: marker_alignments

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Commits on Sep 1, 2021

• Fix for when there's only one value, and it's good

  wbazant

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  3349c9e

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• Prettier logging

  wbazant

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Commits on Aug 31, 2021

• The taxa with counts above cutoff treated as zero in calculations

  wbazant

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• Run the multinomial with 0 last

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• More sensible options for multinomial - up to 20, not always 20

  wbazant

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  1666b18

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• If there are only single counts, the suggested cutoff is to exclude everything

  wbazant

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  defb66f

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• Use log likelihoods for each possible cutoff

  wbazant

  committed
  ebaf6ab

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Commits on Aug 26, 2021

• Model the noise through a beta binomial distribution

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• Implement a noise model based on a binomial distribution

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• Make a separate package for summarizing

  wbazant

  committed
  a167041

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Commits on Aug 24, 2021

• Add max reads in marker

  wbazant

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Commits on Aug 6, 2021

• Rename: taxon_id -> taxon

  wbazant

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Commits on Aug 5, 2021

• Update README.md

  wbazant

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• Update README.md

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Commits on Jul 28, 2021

• Correct header order for marker_all output

  wbazant

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  f8de59e

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• Fix test

  wbazant

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  7bf03ee

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Commits on Jul 27, 2021

• summarize_marker_alignments is a better script name. Also can't install on pip yet.

  wbazant

  committed
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Commits on Jul 23, 2021

• Make the EukProt regex more complicated and also give up on making it work fully correctly. Add lookup table.

  wbazant

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Commits on Jul 22, 2021

• Initial commit

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  800346b

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