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wdecoster authored May 6, 2024
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# NanoPlot
Plotting tool for long read sequencing data and alignments.

[![Twitter URL](https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster)](https://twitter.com/wouter_decoster)
[![conda badge](https://anaconda.org/bioconda/nanoplot/badges/installer/conda.svg)](https://anaconda.org/bioconda/nanoplot)
[![Build Status](https://travis-ci.org/wdecoster/NanoPlot.svg?branch=master)](https://travis-ci.org/wdecoster/NanoPlot)

### NanoPlot is also available as a [web service](http://nanoplot.bioinf.be).

![Example plot](https://github.com/wdecoster/NanoPlot/blob/master/examples/scaled_Log_Downsampled_LengthvsQualityScatterPlot_kde.png)
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(can be gzip, bz2, zip and xz compressed)
- fasta files
(can be bgzip, bzip2 or gzip compressed)
Multiple files of the same type can be offered simultaneously
- arrow files (as created by other tools I have developed)
Multiple files of the same type can be provided simultaneously

### INSTALLATION

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--cram file [file ...]
Data is in one or more sorted cram file(s).
--pickle pickle Data is a pickle file stored earlier.
--feather file [file ...]
Data is in one or more feather file(s).
--feather/--arrow file [file ...]
Data is in one or more feather/arrow file(s).
EXAMPLES:
NanoPlot --summary sequencing_summary.txt --loglength -o summary-plots-log-transformed
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