change warning when no (phased) reads found

wdecoster · Jul 4, 2024 · dfa4d95 · dfa4d95
1 parent 26c39e5
commit dfa4d95
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "STRdust"
-version = "0.8.5"
+version = "0.8.6"
 edition = "2021"
 
 

diff --git a/src/parse_bam.rs b/src/parse_bam.rs
@@ -1,3 +1,4 @@
+use log::warn;
 use rust_htslib::bam;
 use rust_htslib::bam::ext::BamRecordExtensions;
 use rust_htslib::bam::record::Aux;
@@ -78,9 +79,9 @@ pub fn get_overlapping_reads(
     if seqs.is_empty() {
         // error/warning message depends on whether we are looking for phased reads or not
         if unphased {
-            eprintln!("Cannot genotype {repeat}: no reads found");
+            warn!("Cannot genotype {repeat}: no reads found");
         } else {
-            eprintln!("Cannot genotype {repeat}: no phased reads found");
+            warn!("Cannot genotype {repeat}: no phased reads found. Use --unphased to genotype unphased reads.");
         }
         None
     } else {