GitHub - willrockout/Single_Cell_Pipeline: This pipeline does QC, Alignment and obtains Gene Counts to prep Single Cell data

willrockout / Single_Cell_Pipeline Public

This pipeline does QC, Alignment and obtains Gene Counts to prep Single Cell data

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
CompilingRNASeqResults.py		CompilingRNASeqResults.py
Completion_Check.py		Completion_Check.py
Cufflinks.sh		Cufflinks.sh
GenomeMap.sh		GenomeMap.sh
Job_Creation.py		Job_Creation.py
Job_Creation.py~		Job_Creation.py~
RNAFilter.sh		RNAFilter.sh
RQCPlot.R		RQCPlot.R
RQCcontam.py		RQCcontam.py
Read_Me		Read_Me
Test_CuffComp.py		Test_CuffComp.py
TransMap.sh		TransMap.sh
bamUtils.py		bamUtils.py
bio_format_parsers.py		bio_format_parsers.py
info.txt		info.txt
pe_fastq_splitter.py		pe_fastq_splitter.py
read_seperator.py		read_seperator.py
split_stranded_rna_seq_reads.py		split_stranded_rna_seq_reads.py
utils.py		utils.py