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  • academic/ research website

    TeX 1 Updated Dec 24, 2024
  • Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.

    Python 14 3 GNU Lesser General Public License v3.0 Updated Dec 5, 2024
  • python Public

    Miscellaneous Python stuff I am working on

    Python 1 Updated Dec 3, 2024
  • CMU Statistics & Data Science educational data repository

    JavaScript Updated Sep 10, 2024
  • glmpca Public

    R 94 11 GNU Lesser General Public License v3.0 Updated Apr 18, 2024
  • epidatr Public

    Forked from cmu-delphi/epidatr

    [DRAFT] Delphi Epidata API R Client

    R Other Updated Aug 22, 2023
  • nsf-paper Public

    Nonnegative spatial factorization for multivariate count data

    Jupyter Notebook 57 9 GNU Lesser General Public License v3.0 Updated Jun 28, 2023
  • quminorm Public

    Turning the quasi-UMI method into a bioconductor package

    R 10 2 GNU Lesser General Public License v3.0 Updated Mar 3, 2021
  • glmpca-py Public

    generalized principal component analysis (GLM-PCA) implemented in python

    Python 58 7 GNU Lesser General Public License v3.0 Updated Feb 1, 2021
  • tensorflow Public

    sandbox for practice with tensorflow models

    Python Updated Jan 20, 2021
  • scrna2019 Public

    supporting code for the multinomial single cell RNA-Seq paper

    R 51 12 GNU Lesser General Public License v3.0 Updated Jan 6, 2021
  • sandbox for practice implementing optimization algorithms

    R 1 Updated Oct 28, 2020
  • Supporting code for the paper "Identifying Longevity Associated Genes by Integrating Gene Expression and Curated Annotations"

    R Updated Oct 6, 2020
  • stan Public

    practicing with stan

    Stan 1 Updated Sep 4, 2020
  • supporting code for the quasi-UMIs single-cell RNA-seq paper

    R 7 GNU Lesser General Public License v3.0 Updated Jun 10, 2020
  • High performance implementation of the Naive Bayes algorithm in R

    R Updated Oct 29, 2018
  • marsh Public

    salamander ecology

    Stan Updated May 27, 2018
  • HTML MIT License Updated Apr 11, 2018
  • vamf-paper Public

    supporting code for the Varying-Censoring Aware Matrix Factorization paper

    R 4 Updated Sep 29, 2017
  • gp Public

    Gaussian Processes and Bayesian Optimization

    TeX Updated Sep 27, 2017
  • vamf Public

    Varying-Censoring Aware Matrix Factorization R package

    C++ 3 1 Updated Aug 19, 2017
  • A Bioconductor "Summarized Experiment" from the Patel et al. (2014) paper that performed single cell RNA-Seq analysis on human glioblastoma tissue.

    HTML 1 Updated May 20, 2017
  • edward Public

    Sandbox for experimenting with the Edward probabilistic modeling framework in python.

    Jupyter Notebook 1 Updated Mar 23, 2017
  • cthw Public

    Learning C "the hard way" http://c.learncodethehardway.org/book/

    C Updated Jul 26, 2016
  • mit6882 Public

    Course Project for MIT 6.882- Bayesian Modeling

    HTML 5 Updated May 11, 2016
  • haskell Public

    sandbox for learning Haskell

    Haskell Updated Dec 8, 2015
  • ZIFA Public

    Forked from epierson9/ZIFA

    Zero-inflated dimensionality reduction algorithm for single-cell data

    Python MIT License Updated Oct 15, 2015
  • scLVM Public

    Forked from PMBio/scLVM

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

    HTML Apache License 2.0 Updated Sep 22, 2015
  • ped_parser Public

    Forked from moonso/ped_parser

    A python tool for parsing pedigree files

    Python MIT License Updated Aug 11, 2015
  • Web Public

    Learning how to do web stuff like javascript

    Updated Jan 14, 2015