JSON output refactor (#33)

* Refactor of output to be more consistent with wccdm-obs.
bug fix for single subset.

* - Associated fields now correctly used to set quality flag.
- Fix for broken DAYCLI sequence and phenomenonTime.
- First order statistic appended to observed property when present.

* reportIdentifier set to uuid4

* reportIdentifier now sha512 of subset

* env variable fix.

* bytesio fix

* eccodes codes_write.

* Update of result time to be consistent with OMS (e.g. "Where sensor observation results are post-processed, the resultTime is the post-processing time, while the phenomenonTime is the time of initial interaction with the world.")

* Update to handling of z coordinate information.

* Fix to extract descriptions from flag tables.

* Update to tests

* Fixing test environment

* Fixing test environment- py versions

* Fixing test environment - eccodes path

* Use of dim eccodes base image, issues with conda eccodes install and paths.
(dim image also used in w2b where b2g may be run).

* eccodes path fix.

* eccodes path fix.

* eccodes path fix.

* flake8 fix

* Removal of redundant files.

* Updates following review.

* Update of conforms to

* Update of conforms to

* Update of conforms to

.github/workflows/tests.yml

@@ -7,7 +7,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.7, 3.8, 3.9]
+        python-version: ["3.9", "3.10", "3.11"]
 
     steps:
     - uses: actions/checkout@v2
@@ -36,6 +36,7 @@ jobs:
         python3 setup.py install
     - name: run tests ⚙️
       run: |
+        export ECCODES_DEFINITION_PATH=/usr/share/miniconda/envs/__setup_conda/share/eccodes/definitions 
         cd tests
         pytest
     - name: run flake8 ⚙️

Dockerfile

@@ -19,28 +19,22 @@
 #
 ###############################################################################
 
-#FROM ubuntu:latest
-FROM wmoim/dim_eccodes_baseimage:2.28.0
-
+FROM wmoim/dim_eccodes_baseimage:jammy-2.36.0
 ENV DEBIAN_FRONTEND="noninteractive" \
     TZ="Etc/UTC" \
     ECCODES_DIR=/opt/eccodes \
+    ECCODES_DEFINITION_PATH=/opt/eccodes/share/eccodes/definitions \
     PATH="${PATH}:/opt/eccodes/bin"
 
-RUN echo "Acquire::Check-Valid-Until \"false\";\nAcquire::Check-Date \"false\";" | cat > /etc/apt/apt.conf.d/10no--check-valid-until \
-    && apt-get update -y \
-    && apt-get install -y ${BUILD_PACKAGES} libudunits2-0 \
-    && apt-get remove --purge -y ${BUILD_PACKAGES} \
-    && apt autoremove -y  \
-    && apt-get -q clean \
-    && rm -rf /var/lib/apt/lists/*
-
-
-COPY . /tmp/bufr2geojson
+# Install additional packges
+RUN echo apt-get update -y \
+    && apt-get upgrade -y \
+    && apt-get install -y libudunits2-0 curl
 
-RUN cd /tmp/bufr2geojson && python3 setup.py install
-# clean up
-RUN cd /tmp && rm -r bufr2geojson
+WORKDIR /tmp
+COPY . /tmp
+RUN cd /tmp && python3 setup.py install
+RUN cd /tmp && rm -r ./*
 
-WORKDIR /
+WORKDIR /local