added

assets/deploy_scripts/sanger_module_files/1.6.1

@@ -6,7 +6,7 @@ set version [file tail [module-info version [module-info name]]]
 
 proc ModulesHelp { } {
     global version
-    puts stderr "YASCP (Yet Another Single Cell (scRNA) Pieline: https://github.com/wtsi-hgi/yascp) is a nextflow pipeline that QCs the scRNA Cellranger data by removing ambient RNA, deconvoluting donors, assigning celltypes, analysing concordances vs expected genotypes. IMPROVEMENTS: 1) Added support for running cellbender with different parameters. 2) Citeseq, VDJ data integrations using Surat integration, 3) You can now only run only the cellbender step 4) Have added additional 5 doublet detection methods 5) Can provide your own Azimuth and Celltypist references 6) You can now only run the doublet detection step"
+    puts stderr "YASCP (Yet Another Single Cell (scRNA) Pieline: https://github.com/wtsi-hgi/yascp) is a nextflow pipeline that QCs the scRNA Cellranger data by removing ambient RNA, deconvoluting donors, assigning celltypes, analysing concordances vs expected genotypes. IMPROVEMENTS: 1) Improved pipeline logic and bug fixes"
     puts stderr ""
     puts stderr "Yascp module has been set to run in multiple modes:"
     puts stderr "	*yascp -v or yascp -h :will describe the checkout tag used."
@@ -25,7 +25,7 @@ proc ModulesHelp { } {
 }
 
 module-whatis   "Yascp Version: $version" 
-module-whatis   "Yascp version $version is a single cell (scRNA) processing pipeline that takes care of donor deconvolution, ambient rna removal, celltype assignment, integration, clustering and cluster assesments and data qc: yascp (https://github.com/wtsi-hgi/yascp)"
+#//module-whatis   "Yascp version $version is a single cell (scRNA) processing pipeline that takes care of donor deconvolution, ambient rna removal, celltype assignment, integration, clustering and cluster assesments and data qc: yascp (https://github.com/wtsi-hgi/yascp)"
 
 
 set install /software/hgi/pipelines/yascp_versions/yascp_v1.6.1