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Customizing memory and cpu specifications for VMs #33

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Customizing memory and cpu specifications for VMs #33

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48be901
reword of parameters
Mar 7, 2023
802a4da
fixing comments and err msg
Mar 28, 2023
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55 changes: 43 additions & 12 deletions manual-workflows/start.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,9 @@ arguments:
--server-account Email identifier of service account used by main Cromwell instance
--cromwell-conf Local path to configuration file for Cromwell server. DEFAULT \$SRC_DIR/cromwell.conf
--workflow-options Local path to workflow_options.json. DEFAULT \$SRC_DIR/workflow_options.json
--machine-type GCP machine type for the instance. DEFAULT e2-standard-2
--machine-type GCP machine type for the instance. DEFAULT e2-standard-2.
This flag is overridden if --custom-cpu and --custom-memory are specified.
Check gcloud documentations for further details.
--zone DEFAULT us-central1-c. For options, visit: https://cloud.google.com/compute/docs/regions-zones

Additional arguments are passed directly to gsutil compute instances
Expand Down Expand Up @@ -97,15 +99,29 @@ while test $# -gt 0; do
shift
fi
;;
--custom-cpu*)
if [ ! "$2" ]; then
die 'ERROR: "--custom-cpu" requires an argument'
else
CPU=$2
shift
fi
;;
--custom-memory*)
if [ ! "$2" ]; then
die 'ERROR: "--custom-memory" requires an argument'
else
MEM=$2
shift
fi
;;
*)
break
;;
esac
shift
done

MACHINE_TYPE=${MACHINE_TYPE:-"e2-standard-2"}

[ -z $SERVER_ACCOUNT ] && die "Missing argument --server-account"
[ -z $PROJECT ] && die "Missing argument --project"
[ -z $CROMWELL_CONF ] && CROMWELL_CONF="$SRC_DIR/cromwell.conf"
Expand All @@ -132,18 +148,33 @@ EOF
exit 1
fi

MACHINE_TYPE=${MACHINE_TYPE:-"e2-standard-2"}

param=(
--project $PROJECT
--image-family debian-11
--image-project debian-cloud
--zone $ZONE
--service-account=$SERVER_ACCOUNT
--scopes=cloud-platform
--network=$NETWORK
--subnet=$SUBNET
--metadata=cromwell-version=71
--metadata-from-file=startup-script=$SRC_DIR/server_startup.py,cromwell-conf=$CROMWELL_CONF,helpers-sh=$SRC_DIR/helpers.sh,cromwell-service=$SRC_DIR/cromwell.service,workflow-options=$WORKFLOW_OPTIONS,persist-artifacts=$SRC_DIR/../scripts/persist_artifacts.py
)

# add machine type unless --custom-memory and --custom-cpu are specified
if [ -z "$MEM" ] || [ -z "$CPU" ]; then
param+=(--machine-type=$MACHINE_TYPE)
else
param+=(--custom-memory $MEM)
param+=(--custom-cpu $CPU)
fi

# $@ indicates the ability to add any of the other flags that come with gcloud compute instances creat
# for a full account, visit https://cloud.google.com/sdk/gcloud/reference/compute/instances/create
gcloud compute instances create $INSTANCE_NAME \
--project $PROJECT \
--image-family debian-11 \
--image-project debian-cloud \
--zone $ZONE \
--machine-type=$MACHINE_TYPE \
--service-account=$SERVER_ACCOUNT --scopes=cloud-platform \
--network=$NETWORK --subnet=$SUBNET \
--metadata=cromwell-version=71 \
--metadata-from-file=startup-script=$SRC_DIR/server_startup.py,cromwell-conf=$CROMWELL_CONF,helpers-sh=$SRC_DIR/helpers.sh,cromwell-service=$SRC_DIR/cromwell.service,workflow-options=$WORKFLOW_OPTIONS,persist-artifacts=$SRC_DIR/../scripts/persist_artifacts.py \
${param[@]} \
$@

cat <<EOF
Expand Down