LeTRS_v2.2.1

1. corrected some errors.
2. added function to look for primer usage in the reads for amplification of subgenomic mRNAs.

LeTRS_v2.1.1

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LeTRS_v2.0.1

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LeTRS_v1.0.1

For analysis of Illumina data, LeTRS calculates the number of subgnomes in read pairs instead of reads.
For analysis of Illumina data and cDNA nanpore data, LeTRS calculates reads (read pairs) with most primers instead of reads with > 1 poly A and reads with > 5 poly A.

LeTRS_v0.1.9

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