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@xinehc xinehc released this 09 Jun 11:38
· 84 commits to main since this release
v3.1
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Learn about vigilant mode.
  • Minor changes to the SARG database (see SARG v3.0-M).
  • Update diamond to the latest version (from 0.9.24 to 2.0.15), add a new parameter -w (query coverage, default 65%) and modify the default parameter of -v (identity, default 40%) in stageone to compensate the difference in USCMG estimation.
  • Add a mt_mode switcher in stagetwo's blastx to make the pipeline faster when more than 5 cores are available.
  • Add a logger to make stagetwo's stdout more clear.
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