GitHub - yangjun9095/CentralDogma_analysis: Pipeline for anallysis+generating plots for the Central Dogma project.

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Pipeline for anallysis+generating plots for the Central Dogma project.

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Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
BoundaryCharacterizations		BoundaryCharacterizations
Characterization_FP		Characterization_FP
InProgress		InProgress
absolute_calibration		absolute_calibration
deprecated		deprecated
utilities		utilities
.gitattributes		.gitattributes
CorrelatemRNAProtein_function.m		CorrelatemRNAProtein_function.m
Figure_CentralDogma_infermRNAProtein.m		Figure_CentralDogma_infermRNAProtein.m
GetBoundary.m		GetBoundary.m
GetBoundary_Dostatni.m		GetBoundary_Dostatni.m
LlamaTag_BGsubtraction_temp.mat		LlamaTag_BGsubtraction_temp.mat
QC_MS2singleTraces_tracking.m		QC_MS2singleTraces_tracking.m
SimulateRNAPLoading.m		SimulateRNAPLoading.m
SimulationformRNAProtein.m		SimulationformRNAProtein.m
VariabilityAnalysis.m		VariabilityAnalysis.m
calculate_PearsonCorr_prediction_measurement_Protein.m		calculate_PearsonCorr_prediction_measurement_Protein.m
calculatemRNA_overAllNuclei.m		calculatemRNA_overAllNuclei.m
compile_transcription_data.m		compile_transcription_data.m
correlate_prediction_measurement_Protein.m		correlate_prediction_measurement_Protein.m
correlatemRNAProtein.m		correlatemRNAProtein.m
estimateProtein.m		estimateProtein.m
estimate_cytomRNA_protein.m		estimate_cytomRNA_protein.m
estimatemRNA.m		estimatemRNA.m
explore_calculate_Noise_LlamaTag.asv		explore_calculate_Noise_LlamaTag.asv
explore_calculate_Noise_LlamaTag.m		explore_calculate_Noise_LlamaTag.m
explore_calculate_Noise_MS2.m		explore_calculate_Noise_MS2.m
explore_calculate_Noise_cytomRNA.m		explore_calculate_Noise_cytomRNA.m
hbP2_r0123_Variability.m		hbP2_r0123_Variability.m
main01_compile_traces.m		main01_compile_traces.m
main_CorrelateMS2Protein_APbins.m		main_CorrelateMS2Protein_APbins.m
main_CorrelateMS2Protein_wholeEmbryo.m		main_CorrelateMS2Protein_wholeEmbryo.m
noise_20200515.mat		noise_20200515.mat
numericalestimate_mRNA_protein_20200526.mat		numericalestimate_mRNA_protein_20200526.mat
plt_compare_LlamaTagData_numericalEstimate.m		plt_compare_LlamaTagData_numericalEstimate.m
plt_rawData_MS2_LlamaTag.m		plt_rawData_MS2_LlamaTag.m
plt_timeAveraged_MS2Fluo.m		plt_timeAveraged_MS2Fluo.m
predictProtein_fromMS2.m		predictProtein_fromMS2.m
prediction_measurement_corr_06082020.mat		prediction_measurement_corr_06082020.mat
process_LlamaTagData_BGsubtraction.m		process_LlamaTagData_BGsubtraction.m
simulate_cytomRNA_protein.m		simulate_cytomRNA_protein.m
sub_calculateNC13Contribution.m		sub_calculateNC13Contribution.m
temp_files_04232020.mat		temp_files_04232020.mat