workflow test #1
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| name: Tests | |
| on: | |
| push: | |
| branches: [ prioritize_speedup ] | |
| pull_request: | |
| branches: [ prioritize_speedup ] | |
| workflow_dispatch: | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Formatting | |
| uses: github/super-linter@v4 | |
| env: | |
| VALIDATE_ALL_CODEBASE: false | |
| DEFAULT_BRANCH: main | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| VALIDATE_SNAKEMAKE_SNAKEFMT: true | |
| Testing: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Test workflow | |
| uses: snakemake/[email protected] | |
| with: | |
| directory: .tests | |
| snakefile: workflow/Snakefile | |
| args: "--use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --configfile .tests/integration/custom-test/config/config.yml" | |