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yuanx749/README.md

Hi there 👋

Expand 👇 or visit this page to see my public repos and repos contributed to.

Projects List

Research

  • bcell - A framework for linear B-cell epitope prediction and classification. (ECML PKDD 2023)
  • deep-vaccine - Predict multi-epitope vaccine subunit candidates using NLP.
  • master-thesis - The code for my master's degree project.

Tools

  • py-cdhit - A Python package for CD-HIT, clustering protein or nucleotide sequences.
  • auto-sphinx-page-action - GitHub action that creates website using Sphinx.
  • phasty - A Python interface for PHAST (phylogenetic analysis with space/time models).
  • config-argument-parser - A package to help automatically create command-line interface from configuration or code.

Featured Projects

Others

Contributions
  • scikit-learn/scikit-learn - scikit-learn: machine learning in Python
  • pandas-dev/pandas - Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
  • scipy/scipy - SciPy library main repository
  • matplotlib/matplotlib - matplotlib: plotting with Python
  • numpy/numpy - The fundamental package for scientific computing with Python.
  • pytorch/pytorch - Tensors and Dynamic neural networks in Python with strong GPU acceleration
  • pyg-team/pytorch_geometric - Graph Neural Network Library for PyTorch
  • shap/shap - A game theoretic approach to explain the output of any machine learning model.
  • probml/pyprobml - Python code for "Probabilistic Machine learning" book by Kevin Murphy
  • scverse/scanpy - Single-cell analysis in Python. Scales to >1M cells.

Pinned Loading

  1. py-cdhit py-cdhit Public

    A Python package for CD-HIT, clustering protein or nucleotide sequences.

    Python 128

  2. auto-sphinx-page-action auto-sphinx-page-action Public

    GitHub action that creates website using Sphinx.

    Python

  3. vae-mixin-pytorch vae-mixin-pytorch Public

    Variational autoencoders as mixins.

    Python

  4. bcell bcell Public

    A framework for linear B-cell epitope prediction and classification. (ECML PKDD 2023)

    Python 1

  5. config-argument-parser config-argument-parser Public

    A package to help automatically create command-line interface from configuration or code.

    Python 2

  6. genome_analysis genome_analysis Public

    Genome analysis labs.

    Shell