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1. JCVenterInstitute/celligrate JCVenterInstitute/celligrate Public

   Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data

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2. JCVenterInstitute/FRmatch JCVenterInstitute/FRmatch Public

   Cell type matching in single-cell RNA-sequencing data using FR-Match

   R 19 2

3. JCVenterInstitute/NSForest JCVenterInstitute/NSForest Public

   A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

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4. FUNNEL-GSEA-R-Package FUNNEL-GSEA-R-Package Public

   Zhang et al. 2017. FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. Bioinformatics, 33(13), 1944-1952.

   R 6 2

5. PBtest-R-Package PBtest-R-Package Public

   Zhang et al. 2019. Highly Efficient Hypothesis Testing Methods for Regression-type Tests with Correlated Observations and Heterogeneous Variance Structure. BMC Bioinformatics, 20:185.

   R 4

6. simDeNet-R-Package-Shiny simDeNet-R-Package-Shiny Public

   Zhang et al. 2021. The effect of tissue composition on gene co-expression, Briefings in Bioinformatics, 22(1), 127-139.

   R 2 1