Welcome to T-lex 3 Github page

Release 3: Maria Bogaerts [email protected], Josefa Gonzalez [email protected]

You can find us on Github!

Problems during installation? Try our DOCKER file

T-lex is a computational pipeline that detects presence and/or absence of annotated individual transposable elements (TEs) using next-generation sequencing (NGS) data.

Folder content

1. Manual.md : manual updated for T-lex 3
2. tlex-open-v3.0.pl : code file for running T-lex 3
3. example folder: contains an example file for running T-lex 3
4. Dockerfile : DOCKER file to run T-lex 3 as a container (not available for -tsd option)
5. docker.md : manual for running T-lex 3 in DOCKER
6. supporting_information folder: contains scripts and files for calculating sensitivity and specificity