array tests: handle different hexdigests from zlib-ng (#1678) #3330
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | ||
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | ||
| name: Linux Testing | ||
| on: | ||
| push: | ||
| branches: [ support/v2] | ||
| pull_request: | ||
| branches: [ support/v2] | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ['3.11', '3.12', '3.13'] | ||
| numpy_version: ['>=2.1', '==1.24.*'] | ||
| condadeps: 'bsddb3 pip nodejs' | ||
| exclude: | ||
| - python-version: '3.12' | ||
| numpy_version: '==1.24.*' | ||
| include: | ||
| - python-version: '3.12' | ||
| numpy_version: '>=2.1' | ||
| condadeps: 'bsddb3 pip nodejs zlib-ng' | ||
| - python-version: '3.13' | ||
| numpy_version: '==1.24.*' | ||
| services: | ||
| redis: | ||
| image: redis | ||
| # Set health checks to wait until redis has started | ||
| options: >- | ||
| --health-cmd "redis-cli ping" | ||
| --health-interval 10s | ||
| --health-timeout 5s | ||
| --health-retries 5 | ||
| ports: | ||
| - 6379:6379 | ||
| mongodb: | ||
| image: mongo:4.4.11 | ||
| ports: | ||
| - 27017:27017 | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
| - name: Setup Miniconda | ||
| uses: conda-incubator/[email protected] | ||
| with: | ||
| channels: conda-forge | ||
| python-version: ${{ matrix.python-version }} | ||
| env: | ||
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | ||
| # Runs a set of commands using the runners shell | ||
| - name: Create Conda environment with the rights deps | ||
| shell: "bash -l {0}" | ||
| run: | | ||
| conda create -n zarr-env python==${{matrix.python-version}} ${{matrix.condadeps}} | ||
| conda activate zarr-env | ||
| npm install -g azurite | ||
| - name: Install dependencies | ||
| shell: "bash -l {0}" | ||
| run: | | ||
| conda activate zarr-env | ||
| python -m pip install --upgrade pip | ||
| python -m pip install -r requirements_dev_minimal.txt numpy${{matrix.numpy_version}} -r requirements_dev_optional.txt line_profiler pymongo redis | ||
| python -m pip install -e . | ||
| python -m pip freeze | ||
| - name: Tests | ||
| shell: "bash -l {0}" | ||
| env: | ||
| COVERAGE_FILE: .coverage.${{matrix.python-version}}.${{matrix.numpy_version}} | ||
| ZARR_TEST_ABS: 1 | ||
| ZARR_TEST_MONGO: 1 | ||
| ZARR_TEST_REDIS: 1 | ||
| ZARR_V3_EXPERIMENTAL_API: 1 | ||
| ZARR_V3_SHARDING: 1 | ||
| run: | | ||
| conda activate zarr-env | ||
| mkdir ~/blob_emulator | ||
| azurite -l ~/blob_emulator --debug debug.log 2>&1 > stdouterr.log & | ||
| pytest --cov=zarr --cov-config=pyproject.toml --doctest-plus --cov-report xml --cov=./ --timeout=300 | ||
| - uses: codecov/codecov-action@v4 | ||
| env: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| with: | ||
| verbose: true # optional (default = false) | ||
