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Exp/pathseq 20221024 #6

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Exp/pathseq 20221024 #6

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Commits on Oct 24, 2022

  1. made pathseq standalone

    @cschu
    cschu committed Oct 24, 2022
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Commits on Oct 25, 2022

  1. Squashed 'nevermore/' changes from 37e095d..f07fbd0 

    f07fbd0 Import/from krazy 20221018 (#8)
c76b946 Import/from krazy 20220930 (#7)
86dd73d Import/from krazy 20220929 (#6)
f6ddfd4 Import/from gqf 20220919 (#5)

git-subtree-dir: nevermore
git-subtree-split: f07fbd09f1656a7340143caf1b1fe1417d6cd59b
    @cschu
    cschu committed Oct 25, 2022
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  2. Merge commit '42de1d023425bbb885e0646a9f5c8aaf5c7a666c' into exp/path… 

    …seq_20221024
    @cschu
    cschu committed Oct 25, 2022
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  3. updated nvmlib incl. input procedures

    @cschu
    cschu committed Oct 25, 2022
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  4. updated nvmlib incl. input procedures

    @cschu
    cschu committed Oct 25, 2022
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  5. added missing executables

    @cschu
    cschu committed Oct 25, 2022
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  6. corrected nevermore/bin symlinks

    @cschu
    cschu committed Oct 25, 2022
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  7. updated prepare_fastqs run configuration

    @cschu
    cschu committed Oct 25, 2022
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Commits on Oct 26, 2022

  1. added missing ExtractProfiledCounts script

    @cschu
    cschu committed Oct 26, 2022
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Commits on Jan 17, 2023

  1. update: add latest nvm structural changes to input and main workflow

    @cschu
    cschu committed Jan 17, 2023
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  2. fix: added pathseq fix for 4.1.9+ versions

    @cschu
    cschu committed Jan 17, 2023
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  3. fix: parameter is called --microbe-dict not --microbe_dict

    @cschu
    cschu committed Jan 17, 2023
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  4. fix: use correct parameter for bam input

    @cschu
    cschu committed Jan 17, 2023
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Commits on May 29, 2024

  1. remove bin-symlinks for nf 23 compatibility

    @cschu
    cschu committed May 29, 2024
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  2. added collate_stats, v. 0.9

    @cschu
    cschu committed May 29, 2024
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