bumped everything for 2020

Signed-off-by: Nick Papior <[email protected]>
zerothi · Mar 10, 2020 · 81c5c39 · 81c5c39
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commit 81c5c39
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Showing 23 changed files with 34 additions and 51 deletions.
diff --git a/A_01/run.ipynb b/A_01/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -46,7 +45,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/A_02/run.ipynb b/A_02/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -146,7 +145,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/A_03/run.ipynb b/A_03/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -50,7 +49,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/A_04/run.ipynb b/A_04/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -82,7 +81,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/A_05/run.ipynb b/A_05/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -170,7 +169,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/S_01/run.ipynb b/S_01/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -133,7 +132,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/S_02/run.ipynb b/S_02/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -166,7 +165,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/S_03/run.ipynb b/S_03/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -126,7 +125,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_01/run.ipynb b/TB_01/run.ipynb
@@ -13,7 +13,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -376,7 +375,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_02/run.ipynb b/TB_02/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -319,7 +318,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_03/run.ipynb b/TB_03/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -203,7 +202,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_04/run.ipynb b/TB_04/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -319,7 +318,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_05/run.ipynb b/TB_05/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "from matplotlib import animation\n",
@@ -237,7 +236,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_06/run.ipynb b/TB_06/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -377,7 +376,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_07/run.ipynb b/TB_07/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import math\n",
     "import sisl\n",
     "import numpy as np\n",
@@ -291,7 +290,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TB_08/run.ipynb b/TB_08/run.ipynb
@@ -6,13 +6,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import math\n",
     "import tqdm\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
-    "from functools import partial\n",
     "%matplotlib inline"
    ]
   },
@@ -23,12 +21,15 @@
     "In TBtrans and TranSiesta one is capable of performing real space transport calculations by using real space self-energies (see [here](https://doi.org/10.1103/PhysRevB.100.195417)).  \n",
     "Currently the real space self-energy calculation *has* to be performed in `sisl` since it is not implemented in TranSiesta.\n",
     "\n",
+    "A real space self-energy is a $\\mathbf k$ averaged self-energy which can emulate *any* 2D or 3D electrode. I.e. for an STM junction a tip and a surface. In such a system the surface could be modelled using the real space self-energy to remove mirror effects of STM tips.\n",
+    "\n",
     "The basic principle for calculating the real space self-energy is the Brillouin zone integral:\n",
     "\\begin{equation}\n",
     "   \\mathbf G_{\\mathcal R}(E) = \\int_{\\mathrm{BZ}}\\mathbf G_\\mathbf k\n",
     "\\end{equation}\n",
     "In this example we will construct an STM tip probing a graphene flake.\n",
     "\n",
+    "\n",
     "---\n",
     "\n",
     "We start by creating the graphene tight-binding model."

diff --git a/TS_01/run.ipynb b/TS_01/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -157,7 +156,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TS_02/run.ipynb b/TS_02/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -201,7 +200,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TS_03/run.ipynb b/TS_03/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -107,7 +106,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TS_04/run.ipynb b/TS_04/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -297,7 +296,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,

diff --git a/TS_05/run.ipynb b/TS_05/run.ipynb
@@ -6,7 +6,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from __future__ import print_function\n",
     "import sisl\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -133,7 +132,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.1"
+   "version": "3.7.3"
   }
  },
  "nbformat": 4,