WIP: Argparse reaction reference #159
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The actual reaction ID can only be obtained from the resulting object by resolving against a MetabolicModel object. If the reaction does not exist in the MetabolicModel, an error is raised.
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Add specialized
argparsetype for reaction references. This type guards against using non-existing ID since the actual ID string can only be obtained (throughresolve()) if the reaction is defined in the model. Currently requires aMetabolicModelwhich is not ideal for commands that otherwise don't require this model representation. This may have to wait for the work on restructuringNativeModelto be implemented in terms of that model representation instead.