- Updated requirements.txt to support newest python=3.10
- Fixed bugs in all related modules to be compatible with newest version of required packages as of May 2023.
- Tested in WI slurm cluster.
Installation dependency change:
- install pytorchlink and cellpose manually if you need GPU version. (which is usually 10x faster than CPU version in segmenting typical MERFISH datasets)
- run pip install -e MERlin to allow debugging of codes
- Pu Zheng