Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Is biscuit used for methylation calling only? #39

Open
AndyWangSFU opened this issue Mar 11, 2020 · 0 comments
Open

Is biscuit used for methylation calling only? #39

AndyWangSFU opened this issue Mar 11, 2020 · 0 comments

Comments

@AndyWangSFU
Copy link

AndyWangSFU commented Mar 11, 2020 •
edited
Loading

Hi,

I am looking for snp-calling tools to test how many SNPs could be called in our dataset. And I've already tried Bis-snp and Bs-snper, which are used for WGBS snp-calling.

Biscuit looks to be a cool tool. But from the limited documentation, my understanding is like Biscuit is for methylation call only, not snp call. Is that correct?

Thank you very much for your attention. @zwdzwd @ttriche @zackramjan

Best regards,
Andy Wang

Research Assistant
UBC Heart Lung Innovation | Daley Lab
Room 166, 1081 Burrard Street | St. Paul's Hospital
Vancouver, B.C. Canada, V6Z 1Y6
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@AndyWangSFU