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31 Open 10 Closed
31 Open 10 Closed
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Issues list

paired end reads overlap
#48 opened May 23, 2022 by hmyh1202
1
[Issue] pileup "feature"
#47 opened May 15, 2022 by vpbrendel
4
[Issue] wrong tsv output produced by pileup.c
#46 opened May 15, 2022 by vpbrendel
Weird rectangle output
#44 opened Nov 28, 2020 by weishwu
CpG Methylation Calculation from bam file
#43 opened Sep 17, 2020 by Irfanwustl
one read has different CIGAR and read length
#42 opened Sep 15, 2020 by alexyfyf
Compilation problem: Fail to create biscuit binary
#41 opened Apr 22, 2020 by PanZiwei
How is downstream analysis impacted for non-directional bisulfite-sequencing libraries aligned in non-directional mode with biscuit?
#40 opened Mar 13, 2020 by meb326
Is biscuit used for methylation calling only?
#39 opened Mar 11, 2020 by AndyWangSFU
Position of all cytosines in retention pattern
#37 opened Jan 24, 2020 by shahmj
make vcf2bed work with multiprocess
#36 opened Jan 9, 2020 by efratushava
How to prepare for setup_file and files in setup_file?
#30 opened Mar 27, 2019 by xflicsu
1
Make biscuit markdup readgroup-aware
#28 opened Jan 7, 2019 by okartal
alignment and markdup queries
#27 opened Dec 19, 2018 by PoisonAlien
4
Header for snp bed file
#26 opened Dec 18, 2018 by smcnew
2
pileup question/bug?
#24 opened Aug 7, 2018 by ml4wc
Does the -p option allow an interleaved fastq file as input to biscuit align?
#21 opened Jun 9, 2017 by dhspence
1
meaning of vcf2bed output
#20 opened Jun 6, 2017 by vanhzh
2
How can I cite biscuit as a reference in my paper?
#19 opened May 15, 2017 by lijinbella
6
biscuit pileup GT format output as Integer
#18 opened May 2, 2017 by GreenInnovator
1
bam generated with bwa-meth
#17 opened Feb 28, 2017 by PoisonAlien
3
SNP calling and known genotypes (question + feature suggestion)
#16 opened Feb 16, 2017 by jdidion
2
limit number samples biscuit
#15 opened Feb 14, 2017 by jleluyer
biscuit asm fails on generated epiread files
#13 opened Feb 5, 2017 by ttriche
3
Add vcf2bed option to specify sample column
#12 opened Jan 29, 2017 by jdidion
ProTip! Adding no:label will show everything without a label.