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GENOMIC_TEST
Seojeong Shin edited this page Dec 5, 2018
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Field | Required | Type | Description |
---|---|---|---|
genomic_test_id | Yes | integer | A unique identifier for each platform |
care_site_id | Yes | integer | A foreign key to the site of primary care in the care_site table, where the details of the care site are stored. |
genomic_test_name | No | varchar(MAX) | Information about the name of platform using sequencing assigned by institution. |
genomic_test_version | No | varchar(MAX) | Information about the name of platform using sequencing maintained by institution. |
reference_genome | No | varchar(MAX) | Information about the Reference genome used to sequencing analysis |
sequencing_device | No | varchar(MAX) | Sequencer machine information |
library_preparation | No | varchar(MAX) | Information about the preparation method for sequencing library |
target_capture | No | varchar(MAX) | Information about the capture method of Exam and Targeted region |
read_type | No | varchar(MAX) | Information about the method of reading sequence |
read_length | No | integer | Information about the length of Read |
quality_control_tools | No | varchar(MAX) | Information about the tool used to control quality |
total_reads | No | integer | Total count of reads involved in assembly. |
mean_target_coverage | No | float | Mean target coverage |
per_target_base_cover_100x | No | float | Percentage of selected bases |
alignment_tools | No | varchar(MAX) | Information about the name of Alignment tool and it’s version |
variant_calling_tools | No | varchar(MAX) | Information about the name of Variant calling tool and it’s version |
chromosome_corrdinate | No | varchar(MAX) | coordinated system for numbering the chromosomes |
annotation_tools | No | varchar(MAX) | Information about the tool used to Annotation |
annotation_databases | No | varchar(MAX) | Information about the Database used to Annotation |