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GENOMIC_TEST

Seojeong Shin edited this page Dec 5, 2018 · 4 revisions
Field Required Type Description
genomic_test_id Yes integer A unique identifier for each platform
care_site_id Yes integer A foreign key to the site of primary care in the care_site table, where the details of the care site are stored.
genomic_test_name No varchar(MAX) Information about the name of platform using sequencing assigned by institution.
genomic_test_version No varchar(MAX) Information about the name of platform using sequencing maintained by institution.
reference_genome No varchar(MAX) Information about the Reference genome used to sequencing analysis
sequencing_device No varchar(MAX) Sequencer machine information
library_preparation No varchar(MAX) Information about the preparation method for sequencing library
target_capture No varchar(MAX) Information about the capture method of Exam and Targeted region
read_type No varchar(MAX) Information about the method of reading sequence
read_length No integer Information about the length of Read
quality_control_tools No varchar(MAX) Information about the tool used to control quality
total_reads No integer Total count of reads involved in assembly.
mean_target_coverage No float Mean target coverage
per_target_base_cover_100x No float Percentage of selected bases
alignment_tools No varchar(MAX) Information about the name of Alignment tool and it’s version
variant_calling_tools No varchar(MAX) Information about the name of Variant calling tool and it’s version
chromosome_corrdinate No varchar(MAX) coordinated system for numbering the chromosomes
annotation_tools No varchar(MAX) Information about the tool used to Annotation
annotation_databases No varchar(MAX) Information about the Database used to Annotation
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