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MPI iclamp fix#332

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Commits on Feb 7, 2023

• Initial draft auditory filternet

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Commits on Feb 10, 2023

• Trying different temporal envelope

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Commits on Feb 11, 2023

• Work on spectral modulation filters

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Commits on Feb 26, 2023

• Auditory filternet refinement

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Commits on Mar 2, 2023

• Padding and other adjustments to auditory filters

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• Merge pull request AllenInstitute#288 from xpliu16/aud_filternet

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Commits on Mar 14, 2023

• Handling delay, better documentation of filters, passing of threshold

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• Merge pull request AllenInstitute#290 from xpliu16/aud_filternet

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Commits on Mar 29, 2023

• Miscellaneous updates

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• Merge pull request AllenInstitute#295 from xpliu16/aud_filternet

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Commits on Jun 2, 2023

• Aud filternet b_t now variable

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• Merge branch 'develop' into aud_filternet

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• Merge pull request AllenInstitute#304 from xpliu16/aud_filternet

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Commits on Jun 28, 2023

• Fixed psi and direction reading bug

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• Merge branch 'develop' of https://github.com/xpliu16/bmtk into aud_filternet

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• Merge pull request AllenInstitute#310 from xpliu16/aud_filternet

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• Fixed bug on "delay"

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• Merge pull request AllenInstitute#311 from xpliu16/aud_filternet

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Commits on Sep 19, 2023

• update comsol module

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• update bio_comsol example

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• add comsol .mph file (without saved results)

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• small changes

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• add dir structure and probe image

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Commits on Sep 28, 2023

• fix small inconsistency

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Commits on Sep 29, 2023

• fix small errors

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Commits on Oct 4, 2023

• mpi iclamp fix

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Commits on Oct 5, 2023

• Adding example with instructions for using NSG with BioNet

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• Merge pull request AllenInstitute#333 from kaeldai/examples/nsg

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Commits on Nov 1, 2023

• Enabling numba speedup on non-separable FilterNet

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• Revert "Enabling numba speedup on non-separable FilterNet"

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• Making non-separable FilterNet faster (AllenInstitute#335)

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Commits on Nov 8, 2023

• Fixing FilterNet bug (ON/OFF offset, issue AllenInstitute#339) (AllenInstitute#340)

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Commits on Nov 14, 2023

• Made use of numba optional to prevent conflicts with NEST simulator

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• adding some minor alterations to bionet to run more robustly

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• Merge pull request AllenInstitute#341 from kaeldai/fix/numba_tests_nest

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Commits on Dec 27, 2023

• adding PointNet module to insert NEST synapse weight_recorder

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• Adding PointNet example with plastic synapses (and recordings)

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• Adding weight_recorder module documentation

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• Merge pull request AllenInstitute#345 from kaeldai/feature/nest_weight_recorder

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Commits on Feb 21, 2024

• add init files to fix pytest

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• Merge pull request AllenInstitute#347 from kaeldai/fix/pytest_issues

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• Making physical spacing optional for drifting gratings + faster separable FilterNet (AllenInstitute#346)

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Commits on Feb 23, 2024

• Including forgotten docstring (AllenInstitute#348)

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Commits on Feb 26, 2024

• Adding example for running all-active cell simulation with full axon

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• Merge pull request AllenInstitute#349 from kaeldai/example/bio_all_active_sweep

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Commits on Feb 27, 2024

• fixing issue with writing to nwb with mpi and adding some extra documentation

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• Merge pull request AllenInstitute#350 from kaeldai/documentation/nwb_update

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Commits on Mar 13, 2024

• Use inspect module in add_movie for GratingMovie

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• resolving merge conflicts

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• fixing issue with spatial_filter

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Commits on Mar 18, 2024

• Merge pull request AllenInstitute#352 from HDictus/movie-phase

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Commits on Mar 20, 2024

• fixing one last issue

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• fixing merge

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• merge was not fully saved

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• fixing import issue

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• Merge pull request AllenInstitute#351 from AllenInstitute/aud_filternet

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Commits on Mar 21, 2024

• Fixing issue if model_template column is missing

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• Merge pull request AllenInstitute#353 from AllenInstitute/aud_filternet

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• Including forgotten docstring (AllenInstitute#354)

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Commits on Mar 29, 2024

• Auditory filternet tutorial draft

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• Merge pull request AllenInstitute#355 from xpliu16/develop

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• Auditory filternet tutorial update

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• Merge pull request AllenInstitute#356 from xpliu16/develop

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Commits on Apr 1, 2024

• Merge pull request AllenInstitute#330 from nilsvanrompaey/develop

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• minor changes to bio_comsol example

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• Merge pull request AllenInstitute#357 from kaeldai/updates/comsol_example

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• updating version number

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• Merge pull request AllenInstitute#358 from kaeldai/feature/ver_bump_1.1.0

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Commits on Apr 16, 2024

• updated aud filternet

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• Merge branch 'develop' of https://github.com/xpliu16/bmtk into develop

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• Merge pull request AllenInstitute#359 from xpliu16/develop

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Commits on Apr 20, 2024

• Fix error that random seed is not set when using SpikeGenerator(seed=0)

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Commits on Apr 23, 2024

• Merge pull request AllenInstitute#360 from chenziao/develop

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• fixing minor bug with spike-trains unit test

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• Merge pull request AllenInstitute#361 from kaeldai/fix/test_psg_variable

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Commits on Apr 24, 2024

• adding tutorial assests

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Commits on Apr 30, 2024

• Making changes to automatically support ModelDB Hay model HOC Template

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• Fixing filter_movie/ example

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• Merge pull request AllenInstitute#364 from kaeldai/fix/lgn_movies_examples

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Commits on May 1, 2024

• small change to morphology to fix how sections are parsed

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Commits on May 2, 2024

• Found Hoc models that would fail calls to hobj.soma[0] since it cell had only one soma section and hobj.soma was not an iteratble list. Added Cell.soma property that can handle this case

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Commits on May 3, 2024

• adding ability for pointnet to use cell_model decorator when loading cells in batch

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Commits on May 4, 2024

• making updates to spontaneous syns inputs

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• adding ability in bionet and pointnet to handle custom spikes-train functions inputs

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Commits on May 5, 2024

• bionet iclamps can now support ranged section selection

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• Adding ctdb download utils

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Commits on May 7, 2024

• Updating ECP Plotting function

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• Adding fix for when running current clamps across multiple cores

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• Merge pull request AllenInstitute#366 from kaeldai/fix/multicore_iclamp

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Commits on May 8, 2024

• Merge pull request AllenInstitute#362 from kaeldai/fix/aud_filternet_tut

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Commits on May 12, 2024

• Fixing compartment reports to include magic statement when running multi-cores

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• Merge pull request AllenInstitute#367 from kaeldai/fix/add_membrane_magic

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Commits on May 20, 2024

• Enabling to run run.sim() more than once (AllenInstitute#368)

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• NESTML example network

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Commits on May 22, 2024

• Merge pull request AllenInstitute#369 from xpliu16/develop

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• updating way templates can be loaded to fix an ordering bug

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Commits on Jun 14, 2024

• fixing issues with unit tests

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• Merge branch 'update/workshop-2024' of https://github.com/AllenInstitute/bmtk into update/workshop-2024

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• Merge pull request AllenInstitute#372 from AllenInstitute/update/workshop-2024

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Commits on Jun 16, 2024

• fixes for Ch5 of workshop tutorial; remove dt attribute in filternet in create_environment, automatic support for npz movies, fix issue with separable kernel when kernel is empty

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Commits on Jun 25, 2024

• small fix to xstim and larger update of SEClamp module

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• Adding fix to make using NESTML a bit more robust + another NESTML example

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Commits on Jun 26, 2024

• Fixing FilterNet behavior for frame_rate != 1000.0

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Commits on Jul 6, 2024

• some minor fixes

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• Merge pull request AllenInstitute#377 from kaeldai/update/workshop-2024

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• Merge pull request AllenInstitute#378 from AllenInstitute/update/workshop-2024

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Commits on Jul 8, 2024

• Merge branch 'AllenInstitute:develop' into develop

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• Update version to 1.1.1

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• Merge pull request AllenInstitute#379 from AllenInstitute/version-update-1.1.1

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Commits on Aug 29, 2024

• Update version to 1.1.1

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• Allowing grating contrast to be 0.

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• Merge branch 'AllenInstitute:develop' into develop

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• Merge pull request AllenInstitute#375 from shixnya/develop

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Commits on Sep 11, 2024

• mpi iclamp fix

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• changes

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• fix

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• fix

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