temporarily removed the gzip step

BU-ISCIII · Sep 6, 2023 · 44a8492 · 44a8492
1 parent 1db0dd5
commit 44a8492
Showing 1 changed file with 1 addition and 4 deletions.
diff --git a/bu_isciii/templates/wgstrio/ANALYSIS/ANALYSIS01_GENOME/03-annotation/lablog b/bu_isciii/templates/wgstrio/ANALYSIS/ANALYSIS01_GENOME/03-annotation/lablog
@@ -144,7 +144,4 @@ cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_herita
 echo "rm ./filter_heritance/filter_heritance_genes/id_*" >> _05_filter_heritance_ALL.sh
 cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_heritance_genes/vep_annot_%_genes.txt" >> _05_filter_heritance_ALL.sh
 echo "rm ./filter_heritance/filter_heritance_exome/id_*" >> _05_filter_heritance_ALL.sh
-cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_heritance_exome/vep_annot_%_exome.txt" >> _05_filter_heritance_ALL.sh
-
-# annot_all table is huge, lets shrink it a little bit
-echo "srun --partition short_idx -chdir ${scratch_dir} --output logs/COMPRESS_ALL.log --job-name COMPRESS_ANNOT_ALL gzip variants_annot_all.tab &" >> _05_filter_heritance_ALL.sh
+cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_heritance_exome/vep_annot_%_exome.txt" >> _05_filter_heritance_ALL.sh