New release 1.3.6 19-Oct-2020

NEW FEATURES:

• NextSeq software has been updated. So some new version releated fixes have been added.
• Empty fields in RunParameters.xml are now accepted.
  BUG FIXES:
• Possible empty PerfectCode field in bcl2fastq ConversionStats.xml is now accepted.

New release 1.3.5 24-Jan-2020

BUG FIX:

• When displaying samples in search samples, link was broken. Now fixed.

V 1.3.4 Fixed bugs when generating file for basespace

Fixed bugs when the number of the well fields is increased and it becomes bigger than 13.

v 1.3.3 Fixed error in runParameter.xml file

Fixed error when LibraryKit and AnalysisWorkflowType are empty in runParameter.xml file

v1.3.2

** CHANGES:**

• connection and a test run is created for NextSeq and MiSeq

• It also displays the information in settings.py and wetlab_config.py

New release 1.3.1 14-May-2019

FEATURES:

• Workaround to avoid MiSeq runs moves to Error when sequencer has not finished the task
• Allow tables to export to Excel
• Add scroll bar for long tables
• Added error description in admin panel (Run processes)

BUGFIXES:

• Fixing bugs in MiSeq functions. Typo in get_run_state function name.
• Fix 2 typo miseq_run_functions in logging_errors call
• Fixing typo related to issue #12

New Release v.1.3.0 19-Feb-2019

BUG FIXES:

• get_information_run only accepts one parameter now
• open_connection function
• Minor solved bugs

FEATURES:

• Allow that Sample Sheet file does not contain user names in the Description table

• New classes RunErrors and RunState in models

• In runProcess class, new Foreign key for state , stateBeforeError and runError fields

• Remove the Project states field in Project object. Used now the state of the run

• Modify the Samba connection function to use hostname instead of IP address.

• Configuration file has been updated with :

  • New parameters "SAMBA_HOST_NAME" and "IS_DIRECT_TCP"
  • New "WETLAB_MANAGER" to define the group name for wetlab manager
  • New email settings to send an email in case that crontab execution find an error that should be notified via email
  • New "LOGGING_CONFIG_FILE" for log creation from crontab
  • New set of parameters for "ILLUMINA OUTPUT FILES" to easy update if file names changes on new Illumina releases
  • New set of parameters for "VALUE TAG FOR XML FILES" to easy update if file names changes on new Illumina releases
  • New "RETENTION_TIME" to clean up the runs in pre-recorded state and sample sheets not longer used
  • New set of parameters for "MAXIMUM TIME TO WAIT BEFORE MOVING TO ERROR"

• Including heading containing a brief description of the function porpose and variables description, used external functions an the return value, has been added.

• Refactorize functions related to the crontab functionality.

  • For updating runs from Recorded to completed has been re-written to :
    • Two main functions for looking new run folders in the remote server "search_update_new_runs" and "search_not_completed_run" for runs in Sample Sent to Complete
    • Update the information get from files to database as soon as their are available.
    • Complete re-written the code for the MiSeq run
    • Previous python file containing all the functions has been split in several files to have related functions for :generic, MiSeq, NextSeq and common

• New function "delete_invalid_run" to clean un runs that were in pre-recorded state and not used Sample Sheet that are in the system for a time longer than RETENTION_TIME settings

• Refactorize functions on views.py

  • Functions informations about, runs, projects and samples have been moved to a separate file inside the utils folder.
  • Update the code to display run information not longer depends on the run state but if the information is available in database

New release v1.2.0 29-nov-2018

NEW FEATURES:

• MiSeq implementation. Now iSkyLIMS allows the addition of new machines including MiSeq and NextSeq.
• Unknown indexes are matched against known library index kits and showed in run information.
• Added boxplot for run quality control. A normalization approach is used for comparing q30, mean qual, mb yield and cluster pf.
• Now users are allowed to see its own runs besides its own projects.
• Improvement of research statistics calculation. New comparison table showing all researcher projects. Lanes are summarized and machines usage distribution is shown.

iSkyLIMS wetlab v1.1.3

• Hotfix: null field in table, needed for importing.

Release v1.1.2

• Fix bugs in single-end, or single-index sample_sheets. Now working.
• Added timeline tracking in the run processes.
• Renaming the APP to iSkyLIMS_<app_name>
• Splitting the static files into folders ( Static_Common and static_applications)