check if mafft is installed

BU-ISCIII · Apr 11, 2024 · 042dcb3 · 042dcb3
1 parent d9269ce
commit 042dcb3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/taranis/__main__.py b/taranis/__main__.py
@@ -492,7 +492,7 @@ def allele_calling(
     cpus: int,
 ):
     _ = taranis.utils.check_additional_programs_installed(
-        [["blastn", "-version"], ["makeblastdb", "-version"]]
+        [["blastn", "-version"], ["makeblastdb", "-version"],["mafft", "--version"]]
     )
     schema_ref_files = taranis.utils.get_files_in_folder(reference, "fasta")
     if len(schema_ref_files) == 0: