Merge branch 'feature/comparing_schemas' into develop

BU-ISCIII · Nov 2, 2018 · 7758750 · 7758750
2 parents 3a64121 + 644e0f7
commit 7758750
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diff --git a/analyze_schema.py b/analyze_schema.py
@@ -32,6 +32,7 @@ def check_arg(args=None):
 
     evaluate_parser = subparser.add_parser('evaluate', help = 'Evaluate the schema ')
     evaluate_parser.add_argument('-input_dir', help = 'Directory where are the schema files.')
+    evaluate_parser.add_argument('-alt', required = False, help = 'Set to Yes if alternative start codon should be considered. Set to No to accept only ATG start codon', default = False)
 
     compare_parser = subparser.add_parser('compare', help = 'Compare 2 schema')
     compare_parser.add_argument('-scheme1', help = 'Directory where are the schema files for the schema 1')