reduced id threshold for reference allele evaluation from 0.90 to 0.85

BU-ISCIII · Apr 2, 2024 · e5c903a · e5c903a
1 parent 571dcf0
commit e5c903a
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/taranis/clustering.py b/taranis/clustering.py
@@ -22,7 +22,7 @@ def __init__(
         ref_seq_name: str,
         resolution: float = 0.75,
         seed: int = None,
-        dist_value: float = 0.9,
+        dist_value: float = 0.85,
     ):
         """ClusterDistance instance creation
 

diff --git a/taranis/eval_cluster.py b/taranis/eval_cluster.py
@@ -156,7 +156,7 @@ def evaluate_clusters(
             query_file.write(">" + r_id + "\n" + r_seq)
             query_file.seek(0)
             blast_result = self.blast_obj.run_blast(
-                query_file.read(), perc_identity=90, query_type="stdin"
+                query_file.read(), perc_identity=85, query_type="stdin"
             )
             # Close object and discard memory buffer
             query_file.close()