Code

Surrogate Assisted Causal Testing#250

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rsomers1998 merged 60 commits intomainCITCOM-project/CausalTestingFramework:mainfrom surrogateassistedCITCOM-project/CausalTestingFramework:surrogateassistedCopy head branch name to clipboardJan 30, 2024

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Commits on Nov 27, 2023

• splitting linear regression into linear and polynomial estimators

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• black

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• Outline of testing approach

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• cleanup + search algo interface

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Commits on Nov 28, 2023

• Testing approach outline with object interfaces

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• basic surrogate + fitness function generation

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• example code for simulator interfacing

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• GA search base class

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• metadata pulled from DAG for inclusion in testing and their expected causal relation

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Commits on Nov 29, 2023

• Minimal working version for CauSAT + minor changes to identification for hidden variables

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• Working version, runtime GA constraints + GA configuration

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• formatting

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Commits on Dec 1, 2023

• moved examples and implemented multithreading

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Commits on Dec 4, 2023

• Added contradiction data to output + black formatting

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Commits on Dec 6, 2023

• Additional return info + fixed multithreading

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• updated aps case study for multithreading

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Commits on Dec 12, 2023

• surrogate assisted code moved to seperate package + updating example code

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Commits on Dec 14, 2023

• Remove examples

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• Abstract base classes, formatting and other comments

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Commits on Dec 15, 2023

• Added fitness function comment + removed multiprocessing code

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• Linting for estimators.py

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• Make remove_hidden_adjustment_sets method static

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• reformat & black causal_dag.py

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• docstrings for causal_dag.py

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Commits on Dec 19, 2023

• linting + black for surrogate_search_algorithms.py

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Commits on Dec 21, 2023

• Docstrings

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Commits on Dec 22, 2023

• Add: initial unit tests for causal surrogate

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• Revert "Add: initial unit tests for causal surrogate"

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Commits on Jan 2, 2024

• Included a condition for invalid data returned

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Commits on Jan 3, 2024

• Renamed PolynomialRegressionEstimator to CubicSplineRegressionEstimator

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• Merge remote-tracking branch 'origin/surrogateassisted' into surrogateassisted

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• function & class strings for ABC classes

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• Add all docstrings to causal_surrogate_assisted.py

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• remaining linting + black for causal_surrogate_assisted.py

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Commits on Jan 4, 2024

• Move functionality into static method called create_gene_types

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• Add type parameter to configuration variable

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• Ignore cell-var-from-loop for surrogate_search_algorithms.py

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• black

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• Remove generic exception

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• Formalise ABCs

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• Pylinting + updating doc string and typing

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• Pygad signature comment

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• Updated doc string max executions

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• Basic tests to stop tests failing

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Commits on Jan 15, 2024

• Adding tests

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• Updated dependencies

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• Updated dependencies

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• Test coverage

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• Linting

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• Fixed test

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• Fixed test

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Commits on Jan 17, 2024

• Fixed bug in fitness function scope

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• linting

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• Merge remote-tracking branch 'origin/surrogateassisted' into surrogateassisted

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• Fix: linting and added __init__.py to surrogate

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• Fix: linting error

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• Fix: linting error #2

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• Fix: linting error #3

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Commits on Jan 26, 2024

• Fix: supress lintings locally

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Commits on Jan 30, 2024

• Merge branch 'main' into surrogateassisted

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