fixed publishing error

OHDSI · Oct 15, 2024 · 10bfadd · 10bfadd
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diff --git a/docs/_freeze/index/execute-results/html.json b/docs/_freeze/index/execute-results/html.json
@@ -1,9 +1,11 @@
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-  "hash": "35f3e2556de245a0a8afc140fd965108",
+  "hash": "2eaf91892801ddae7c239366db9195f1",
   "result": {
     "engine": "knitr",
-    "markdown": "---\ntitle: \"OHDSI HSIG\"\ndescription: \"Health Systems Interest Group\"\nformat: html\nengine: knitr\n\nabout:\n  id: about\n  template: jolla\n  links:\n    - text: '{{< iconify material-symbols:info>}} About'\n      href: about.qmd\n    - text: \"{{< iconify material-symbols:forum>}} Forums\"\n      href: https://forums.ohdsi.org/\n    - text: '{{< iconify mdi:blog>}} Wiki'\n      href: https://www.ohdsi.org/web/wiki/doku.php\n    - text: '{{< iconify mdi:github>}} GitHub'\n      href: https://github.com/OHDSI/HealthSystems\n    - text: '{{< iconify mdi:rss>}} RSS'\n      href: why.qmd\n    - text: '{{< iconify material-symbols:co-present>}} Global Symposium'\n      href: https://www.ohdsi.org/ohdsi2024/\n\n---\n\n\n\n\n::: {#about}\n:::\n\n\n\n\n{{< pagebreak >}}\n\n\n\n\n\n\n::: {.column-page}\n\n# Welcome to OHDSI HSIG\n\nThe Observational Health Data Sciences and Informatics (or OHDSI, pronounced \"Odyssey\") program is a multi-stakeholder, interdisciplinary collaborative to bring out the value of health data through large-scale analytics. All our solutions are open-source.\n\nOHDSI has established an international network of researchers and observational health databases with a central coordinating center housed at Columbia University.\n\n\n\n\n# Collaborators say...\n:::\n\n::: {.index-grid}\n\n::: {.index-g-col-4 .card .border-light .mb-3 .text-center}\n::: {.card-body}\n[\"This block would include a quote from an academic source.\"]{.card-text}\n\n[Academic Quote Source]{.blockquote-footer}\n:::\n:::\n\n::: {.index-g-col-4 .card .border-light .mb-3 .text-center}\n::: {.card-body}\n[\"This block would include a quote from a government source.\"]{.card-text}\n\n[Government Quote Source]{.blockquote-footer}\n:::\n:::\n\n::: {.index-g-col-4 .card .border-light .mb-3 .text-center}\n::: {.card-body}\n[\"This block would include a quote from an industry source.\"]{.card-text}\n\n[Industry Quote Source]{.blockquote-footer}\n:::\n:::\n",
-    "supporting": [],
+    "markdown": "---\ntitle: \"OHDSI HSIG\"\ndescription: \"Health Systems Interest Group\"\nformat: html\nengine: knitr\n\nabout:\n  id: about\n  template: jolla\n  links:\n    - text: '{{< iconify material-symbols:info>}} About'\n      href: about.qmd\n    - text: \"{{< iconify material-symbols:forum>}} Forums\"\n      href: https://forums.ohdsi.org/\n    - text: '{{< iconify mdi:blog>}} Wiki'\n      href: https://www.ohdsi.org/web/wiki/doku.php\n    - text: '{{< iconify mdi:github>}} GitHub'\n      href: https://github.com/OHDSI/HealthSystems\n    - text: '{{< iconify mdi:rss>}} RSS'\n      href: why.qmd\n    - text: '{{< iconify material-symbols:co-present>}} Global Symposium'\n      href: https://www.ohdsi.org/ohdsi2024/\n\n---\n\n\n\n\n::: {#about}\n:::\n\n\n\n\n{{< pagebreak >}}\n\n\n\n\n\n\n::: {.column-page}\n\n# Welcome to OHDSI Health Systems Interest Group\n\nThe Observational Health Data Sciences and Informatics (or OHDSI, pronounced \"Odyssey\") program is a multi-stakeholder, interdisciplinary collaborative to bring out the value of health data through large-scale analytics. All our solutions are open-source.\n\nOHDSI’s mission - To improve health by empowering a community to collaboratively generate the evidence that promotes better health decisions and better care.\n\nHealthcare Systems Interest Group mission - To help each other and learn from experience.\nOur group mainly supports health systems, hospitals, and others who have electronic health record (EHR) data on their OHDSI journey to produce reliable, reproducible evidence.\n\nThe Health Systems group meets every other Monday at 10am Eastern Time. Please join us on the [MS Teams call](https://teams.microsoft.com/l/team/19%3A2b9db953a46441c8be51cb3d3785cac3%40thread.tacv2/conversations?groupId=198ebad0-c5b9-4991-8a5e-55e6d71cb817&tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5)\n\n\n\n# Collaborators say...\n:::\n\n::: {.index-grid}\n\n::: {.index-g-col-4 .card .border-light .mb-3 .text-center}\n::: {.card-body}\n[\"This block would include a quote from an academic source.\"]{.card-text}\n\n[Academic Quote Source]{.blockquote-footer}\n:::\n:::\n\n::: {.index-g-col-4 .card .border-light .mb-3 .text-center}\n::: {.card-body}\n[\"This block would include a quote from a government source.\"]{.card-text}\n\n[Government Quote Source]{.blockquote-footer}\n:::\n:::\n\n::: {.index-g-col-4 .card .border-light .mb-3 .text-center}\n::: {.card-body}\n[\"This block would include a quote from an industry source.\"]{.card-text}\n\n[Industry Quote Source]{.blockquote-footer}\n:::\n:::\n",
+    "supporting": [
+      "index_files"
+    ],
     "filters": [
       "rmarkdown/pagebreak.lua"
     ],

diff --git a/docs/index_files/figure-html/unnamed-chunk-1-1.png b/docs/index_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/src/404.html b/docs/src/404.html
@@ -23,25 +23,25 @@
 </style>
 
 
-<script src="/site_libs/quarto-nav/quarto-nav.js"></script>
-<script src="/site_libs/quarto-nav/headroom.min.js"></script>
-<script src="/site_libs/clipboard/clipboard.min.js"></script>
-<script src="/site_libs/quarto-search/autocomplete.umd.js"></script>
-<script src="/site_libs/quarto-search/fuse.min.js"></script>
-<script src="/site_libs/quarto-search/quarto-search.js"></script>
-<meta name="quarto:offset" content="/">
-<script src="/site_libs/quarto-html/quarto.js"></script>
-<script src="/site_libs/quarto-html/popper.min.js"></script>
-<script src="/site_libs/quarto-html/tippy.umd.min.js"></script>
-<script src="/site_libs/quarto-html/anchor.min.js"></script>
-<link href="/site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="/site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
-<link href="/site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
-<script src="/site_libs/bootstrap/bootstrap.min.js"></script>
-<link href="/site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="/site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
-<link href="/site_libs/bootstrap/bootstrap-dark.min.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
-<script src="/site_libs/quarto-contrib/iconify-2.1.0/iconify-icon.min.js"></script>
+<script src="/HealthSystems/site_libs/quarto-nav/quarto-nav.js"></script>
+<script src="/HealthSystems/site_libs/quarto-nav/headroom.min.js"></script>
+<script src="/HealthSystems/site_libs/clipboard/clipboard.min.js"></script>
+<script src="/HealthSystems/site_libs/quarto-search/autocomplete.umd.js"></script>
+<script src="/HealthSystems/site_libs/quarto-search/fuse.min.js"></script>
+<script src="/HealthSystems/site_libs/quarto-search/quarto-search.js"></script>
+<meta name="quarto:offset" content="/HealthSystems/">
+<script src="/HealthSystems/site_libs/quarto-html/quarto.js"></script>
+<script src="/HealthSystems/site_libs/quarto-html/popper.min.js"></script>
+<script src="/HealthSystems/site_libs/quarto-html/tippy.umd.min.js"></script>
+<script src="/HealthSystems/site_libs/quarto-html/anchor.min.js"></script>
+<link href="/HealthSystems/site_libs/quarto-html/tippy.css" rel="stylesheet">
+<link href="/HealthSystems/site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
+<link href="/HealthSystems/site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
+<script src="/HealthSystems/site_libs/bootstrap/bootstrap.min.js"></script>
+<link href="/HealthSystems/site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
+<link href="/HealthSystems/site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
+<link href="/HealthSystems/site_libs/bootstrap/bootstrap-dark.min.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
+<script src="/HealthSystems/site_libs/quarto-contrib/iconify-2.1.0/iconify-icon.min.js"></script>
 <script id="quarto-search-options" type="application/json">{
   "location": "navbar",
   "copy-button": false,
@@ -68,10 +68,10 @@
     "search-label": "Search"
   }
 }</script>
-<script data-goatcounter="https://hestia.goatcounter.com/count" async="" src="//gc.zgo.at/count.js"></script>
+<script data-goatcounter="https://hestia.goatcounter.com/count" async="" src="/HealthSystems//gc.zgo.at/count.js"></script>
 
 
-<link rel="stylesheet" href="/styles.css">
+<link rel="stylesheet" href="/HealthSystems/styles.css">
 </head>
 
 <body class="nav-fixed">
@@ -81,10 +81,10 @@
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
       <div class="navbar-brand-container mx-auto">
-    <a href="/index.html" class="navbar-brand navbar-brand-logo">
-    <img src="/logo.svg" alt="" class="navbar-logo">
+    <a href="/HealthSystems/index.html" class="navbar-brand navbar-brand-logo">
+    <img src="/HealthSystems/logo.svg" alt="" class="navbar-logo">
     </a>
-    <a class="navbar-brand" href="/index.html">
+    <a class="navbar-brand" href="/HealthSystems/index.html">
     <span class="navbar-title">OHDSI HSIG</span>
     </a>
   </div>
@@ -95,11 +95,11 @@
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
   <li class="nav-item">
-    <a class="nav-link" href="/index.html"> 
+    <a class="nav-link" href="/HealthSystems/index.html"> 
 <span class="menu-text">Home</span></a>
   </li>  
   <li class="nav-item">
-    <a class="nav-link" href="/getting-started/getting-started.html"> 
+    <a class="nav-link" href="/HealthSystems/getting-started/getting-started.html"> 
 <span class="menu-text">Getting Started</span></a>
   </li>  
   <li class="nav-item dropdown ">
@@ -108,19 +108,23 @@
     </a>
     <ul class="dropdown-menu" aria-labelledby="nav-menu-resources">    
         <li>
-    <a class="dropdown-item" href="/resources/converting_ndc.html">
+    <a class="dropdown-item" href="/HealthSystems/resources/converting_ndc.html">
  <span class="dropdown-text">Converting NDC</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="/resources/proprietary.html">
+    <a class="dropdown-item" href="/HealthSystems/resources/Overview.html">
+ <span class="dropdown-text">Overview</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="/HealthSystems/resources/proprietary.html">
  <span class="dropdown-text">Proprietary and PHI considerations</span></a>
   </li>  
     </ul>
   </li>
 </ul>
             <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item">
-    <a class="nav-link" href="/presentations.html"> 
+    <a class="nav-link" href="/HealthSystems/presentations.html"> 
 <span class="menu-text">Presentations</span></a>
   </li>  
   <li class="nav-item dropdown ">
@@ -129,20 +133,16 @@
     </a>
     <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-tools">    
         <li>
-    <a class="dropdown-item" href="/tools/00_overview.html">
+    <a class="dropdown-item" href="/HealthSystems/tools/00_overview.html">
  <span class="dropdown-text">Overview</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="/tools/01_jackalope.html">
+    <a class="dropdown-item" href="/HealthSystems/tools/01_jackalope.html">
  <span class="dropdown-text">Jackalope</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="/tools/02_databuildtool.html">
+    <a class="dropdown-item" href="/HealthSystems/tools/02_databuildtool.html">
  <span class="dropdown-text">Data Build Tool</span></a>
-  </li>  
-        <li>
-    <a class="dropdown-item" href="/tools/03_caboodle.html">
- <span class="dropdown-text">Caboodle</span></a>
   </li>  
     </ul>
   </li>
@@ -152,7 +152,7 @@
     </a>
     <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-contribute">    
         <li>
-    <a class="dropdown-item" href="/contribute/submit_mappings.html">
+    <a class="dropdown-item" href="/HealthSystems/contribute/submit_mappings.html">
  <span class="dropdown-text">Instructions for mapping contributions</span></a>
   </li>  
     </ul>
@@ -451,7 +451,7 @@ <h1 class="title">Page not found</h1>
   }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/OHDSI\.github\.io\/HealthSystems\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/docs/src/TODO.html b/docs/src/TODO.html
@@ -110,6 +110,10 @@
         <li>
     <a class="dropdown-item" href="./resources/converting_ndc.html">
  <span class="dropdown-text">Converting NDC</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./resources/Overview.html">
+ <span class="dropdown-text">Overview</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./resources/proprietary.html">
@@ -139,10 +143,6 @@
         <li>
     <a class="dropdown-item" href="./tools/02_databuildtool.html">
  <span class="dropdown-text">Data Build Tool</span></a>
-  </li>  
-        <li>
-    <a class="dropdown-item" href="./tools/03_caboodle.html">
- <span class="dropdown-text">Caboodle</span></a>
   </li>  
     </ul>
   </li>
@@ -442,7 +442,7 @@
   }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/OHDSI\.github\.io\/HealthSystems\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/docs/src/about.html b/docs/src/about.html
@@ -110,6 +110,10 @@
         <li>
     <a class="dropdown-item" href="./resources/converting_ndc.html">
  <span class="dropdown-text">Converting NDC</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./resources/Overview.html">
+ <span class="dropdown-text">Overview</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./resources/proprietary.html">
@@ -139,10 +143,6 @@
         <li>
     <a class="dropdown-item" href="./tools/02_databuildtool.html">
  <span class="dropdown-text">Data Build Tool</span></a>
-  </li>  
-        <li>
-    <a class="dropdown-item" href="./tools/03_caboodle.html">
- <span class="dropdown-text">Caboodle</span></a>
   </li>  
     </ul>
   </li>
@@ -451,7 +451,7 @@ <h1 class="title">About</h1>
   }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/OHDSI\.github\.io\/HealthSystems\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/docs/src/collaborate/collaborate.html b/docs/src/collaborate/collaborate.html
@@ -110,6 +110,10 @@
         <li>
     <a class="dropdown-item" href="../resources/converting_ndc.html">
  <span class="dropdown-text">Converting NDC</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../resources/Overview.html">
+ <span class="dropdown-text">Overview</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../resources/proprietary.html">
@@ -139,10 +143,6 @@
         <li>
     <a class="dropdown-item" href="../tools/02_databuildtool.html">
  <span class="dropdown-text">Data Build Tool</span></a>
-  </li>  
-        <li>
-    <a class="dropdown-item" href="../tools/03_caboodle.html">
- <span class="dropdown-text">Caboodle</span></a>
   </li>  
     </ul>
   </li>
@@ -450,7 +450,7 @@ <h1 class="title">Collaborate</h1>
   }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/OHDSI\.github\.io\/HealthSystems\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/docs/src/contribute/index.html b/docs/src/contribute/index.html
@@ -110,6 +110,10 @@
         <li>
     <a class="dropdown-item" href="../resources/converting_ndc.html">
  <span class="dropdown-text">Converting NDC</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../resources/Overview.html">
+ <span class="dropdown-text">Overview</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../resources/proprietary.html">
@@ -139,10 +143,6 @@
         <li>
     <a class="dropdown-item" href="../tools/02_databuildtool.html">
  <span class="dropdown-text">Data Build Tool</span></a>
-  </li>  
-        <li>
-    <a class="dropdown-item" href="../tools/03_caboodle.html">
- <span class="dropdown-text">Caboodle</span></a>
   </li>  
     </ul>
   </li>
@@ -433,7 +433,7 @@
   }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/OHDSI\.github\.io\/HealthSystems\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }

diff --git a/docs/src/contribute/submit_mappings.html b/docs/src/contribute/submit_mappings.html
@@ -110,6 +110,10 @@
         <li>
     <a class="dropdown-item" href="../resources/converting_ndc.html">
  <span class="dropdown-text">Converting NDC</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../resources/Overview.html">
+ <span class="dropdown-text">Overview</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../resources/proprietary.html">
@@ -139,10 +143,6 @@
         <li>
     <a class="dropdown-item" href="../tools/02_databuildtool.html">
  <span class="dropdown-text">Data Build Tool</span></a>
-  </li>  
-        <li>
-    <a class="dropdown-item" href="../tools/03_caboodle.html">
- <span class="dropdown-text">Caboodle</span></a>
   </li>  
     </ul>
   </li>
@@ -224,7 +224,7 @@ <h2 id="toc-title">On this page</h2>
 
 <section id="instructions-for-mapping-contributions" class="level2">
 <h2 class="anchored" data-anchor-id="instructions-for-mapping-contributions">Instructions for mapping contributions</h2>
-<p>Only two fields are required, standard concept_id and source value; all other fields are highly encouraged &amp; valuable to users</p>
+<p>The HSIG continues to flesh out the requirements for how collaborators can best share their semantic mappings. If you would like to contribute to this effort, please join one of our meetings, post a message to our <a href="https://teams.microsoft.com/l/channel/19%3A2b9db953a46441c8be51cb3d3785cac3%40thread.tacv2/General?groupId=198ebad0-c5b9-4991-8a5e-55e6d71cb817&amp;tenantId=a30f0094-9120-4aab-ba4c-e5509023b2d5">chat</a> in MS Teams or reach out to Melanie Philofsky.</p>
 
 
 </section>
@@ -466,7 +466,7 @@ <h2 class="anchored" data-anchor-id="instructions-for-mapping-contributions">Ins
   }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
+      var filterRegex = new RegExp("https:\/\/OHDSI\.github\.io\/HealthSystems\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }