Change covr configuration in GitHub actions (#178) #20
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pkgdown.yaml | |
| permissions: read-all | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: write | |
| services: | |
| postgres: | |
| image: postgres:latest | |
| env: | |
| POSTGRES_DB: strategus | |
| POSTGRES_USER: user | |
| POSTGRES_PASSWORD: password | |
| POSTGRES_HOST: postgres | |
| POSTGRES_PORT: 5432 | |
| ports: | |
| - 5432:5432 | |
| options: --name postgres --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Setup R Dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Wait for PostgreSQL to be ready | |
| run: | | |
| until pg_isready -h 127.0.0.1 -p 5432 -U myuser; do | |
| echo "Waiting for postgres..."; | |
| sleep 3; | |
| done | |
| - name: Run SQL Script | |
| run: | | |
| PGPASSWORD=password psql -h 127.0.0.1 -U user -d strategus -f extras/rdms/full_data_model_pg.sql | |
| - name: Configure SchemaSpy environment | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install default-jdk -y | |
| sudo apt-get install postgresql-client -y | |
| - name: Download PostgreSQL JDBC Driver | |
| run: | | |
| wget https://jdbc.postgresql.org/download/postgresql-42.2.24.jar -O $HOME/postgresql-jdbc.jar | |
| - name: Execute SchemaSpy | |
| run: | | |
| java -jar extras/rdms/schemaspy-6.2.4.jar -vizjs -dp $HOME -configFile extras/rdms/schemaspy-config.properties -meta extras/rdms/schema_meta.xml -debug -desc "Results data model" -noTablePaging -noimplied | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: documentation-artifact | |
| path: public | |
| - name: download documentation | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: documentation-artifact | |
| path: docs/results-schema | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |