Add description to CI module RDMS

R/Module-CohortIncidence.R

@@ -198,8 +198,9 @@ CohortIncidenceModule <- R6::R6Class(
       return(data)
     },
     .getResultsDataModelSpecification = function() {
-      rdms <- CohortGenerator::readCsv(
-        file = private$.getResultsDataModelSpecificationFileLocation()
+      rdms <- readr::read_csv(
+        file = private$.getResultsDataModelSpecificationFileLocation(),
+        show_col_types = FALSE
       )
       rdms$tableName <-paste0(self$tablePrefix, rdms$tableName)
       return(rdms)

inst/csv/cohortIncidenceRdms.csv

@@ -1,48 +1,48 @@
-table_name,column_name,data_type,is_required,primary_key
-incidence_summary,ref_id ,int,no,no
-incidence_summary,database_id,varchar(255),yes,no
-incidence_summary,source_name,varchar(255),no,no
-incidence_summary,target_cohort_definition_id,bigint,no,no
-incidence_summary,tar_id,bigint,no,no
-incidence_summary,subgroup_id,bigint,no,no
-incidence_summary,outcome_id,bigint,no,no
-incidence_summary,age_group_id,int,no,no
-incidence_summary,gender_id,int,no,no
-incidence_summary,gender_name,varchar(255),no,no
-incidence_summary,start_year,int,no,no
-incidence_summary,persons_at_risk_pe,bigint,no,no
-incidence_summary,persons_at_risk,bigint,no,no
-incidence_summary,person_days_pe,bigint,no,no
-incidence_summary,person_days,bigint,no,no
-incidence_summary,person_outcomes_pe,bigint,no,no
-incidence_summary,person_outcomes,bigint,no,no
-incidence_summary,outcomes_pe,bigint,no,no
-incidence_summary,outcomes,bigint,no,no
-incidence_summary,incidence_proportion_p100p,float,no,no
-incidence_summary,incidence_rate_p100py,float,no,no
-target_def,ref_id,int,yes,yes
-target_def,target_cohort_definition_id,bigint,yes,yes
-target_def,target_name,varchar(255),no,no
-outcome_def,ref_id,int,yes,yes
-outcome_def,outcome_id,bigint,yes,yes
-outcome_def,outcome_cohort_definition_id,bigint,no,no
-outcome_def,outcome_name,varchar(255),no,no
-outcome_def,clean_window,bigint,no,no
-outcome_def,excluded_cohort_definition_id,bigint,no,no
-tar_def,ref_id,int,yes,yes
-tar_def,tar_id,bigint,yes,yes
-tar_def,tar_start_with,varchar(10),no,no
-tar_def,tar_start_offset,bigint,no,no
-tar_def,tar_end_with,varchar(10),no,no
-tar_def,tar_end_offset,bigint,no,no
-age_group_def,ref_id,int,yes,yes
-age_group_def,age_group_id,int,yes,yes
-age_group_def,age_group_name,varchar(255),yes,no
-age_group_def,min_age,int,no,no
-age_group_def,max_age,int,no,no
-subgroup_def,ref_id,int,yes,yes
-subgroup_def,subgroup_id,bigint,no,yes
-subgroup_def,subgroup_name,varchar(255),no,no
-target_outcome_ref,ref_id,int,yes,yes
-target_outcome_ref,target_cohort_id,bigint,yes,yes
-target_outcome_ref,outcome_cohort_id,bigint,yes,yes
+table_name,column_name,data_type,is_required,primary_key,description
+incidence_summary,ref_id,int,no,no,
+incidence_summary,database_id,varchar(255),yes,no,
+incidence_summary,source_name,varchar(255),no,no,
+incidence_summary,target_cohort_definition_id,bigint,no,no,
+incidence_summary,tar_id,bigint,no,no,
+incidence_summary,subgroup_id,bigint,no,no,
+incidence_summary,outcome_id,bigint,no,no,
+incidence_summary,age_group_id,int,no,no,
+incidence_summary,gender_id,int,no,no,
+incidence_summary,gender_name,varchar(255),no,no,
+incidence_summary,start_year,int,no,no,
+incidence_summary,persons_at_risk_pe,bigint,no,no,
+incidence_summary,persons_at_risk,bigint,no,no,
+incidence_summary,person_days_pe,bigint,no,no,
+incidence_summary,person_days,bigint,no,no,
+incidence_summary,person_outcomes_pe,bigint,no,no,
+incidence_summary,person_outcomes,bigint,no,no,
+incidence_summary,outcomes_pe,bigint,no,no,
+incidence_summary,outcomes,bigint,no,no,
+incidence_summary,incidence_proportion_p100p,float,no,no,
+incidence_summary,incidence_rate_p100py,float,no,no,
+target_def,ref_id,int,yes,yes,
+target_def,target_cohort_definition_id,bigint,yes,yes,
+target_def,target_name,varchar(255),no,no,
+outcome_def,ref_id,int,yes,yes,
+outcome_def,outcome_id,bigint,yes,yes,
+outcome_def,outcome_cohort_definition_id,bigint,no,no,
+outcome_def,outcome_name,varchar(255),no,no,
+outcome_def,clean_window,bigint,no,no,
+outcome_def,excluded_cohort_definition_id,bigint,no,no,
+tar_def,ref_id,int,yes,yes,
+tar_def,tar_id,bigint,yes,yes,
+tar_def,tar_start_with,varchar(10),no,no,
+tar_def,tar_start_offset,bigint,no,no,
+tar_def,tar_end_with,varchar(10),no,no,
+tar_def,tar_end_offset,bigint,no,no,
+age_group_def,ref_id,int,yes,yes,
+age_group_def,age_group_id,int,yes,yes,
+age_group_def,age_group_name,varchar(255),yes,no,
+age_group_def,min_age,int,no,no,
+age_group_def,max_age,int,no,no,
+subgroup_def,ref_id,int,yes,yes,
+subgroup_def,subgroup_id,bigint,no,yes,
+subgroup_def,subgroup_name,varchar(255),no,no,
+target_outcome_ref,ref_id,int,yes,yes,
+target_outcome_ref,target_cohort_id,bigint,yes,yes,
+target_outcome_ref,outcome_cohort_id,bigint,yes,yes,