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Thermal example #22

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2ac9bef
Add: Gate origin placement convention
ThomasDeschler May 25, 2016
d981ae1
DICOM origin shifting
ThomasDeschler May 25, 2016
e0be11a
Removing unnecessary printinfo
ThomasDeschler May 26, 2016
d1de851
Floating precision bug correction
ThomasDeschler May 26, 2016
1c94270
Floating precision bug correction
ThomasDeschler May 26, 2016
23f225b
Add: DICOM rotation support
ThomasDeschler May 26, 2016
c1cbf86
skip empty spots
dsarrut Jun 3, 2016
d04aafb
Merge remote-tracking branch 'github/develop' into develop
dsarrut Jun 3, 2016
cef33bb
Merge branch 'opengate/develop' into dicom-dev
ThomasDeschler Jun 6, 2016
2e24481
Merge branch 'y90-voxelized' of https://github.com/JStrydhorst/Gate i…
dsarrut Jun 7, 2016
5eb558b
add example for fast Y90 source
JStrydhorst Jun 7, 2016
dda3229
Merge branch 'JStrydhorst-y90-voxelized' into develop
dsarrut Jun 7, 2016
bfb122e
cosmetic: phaseSpace Actor; added chargeFilter in particleFilterActor
andiresch Jun 13, 2016
584208d
Merged updates and bugfixes from PGTLE branch for the vpgTLE actors
Jun 14, 2016
d8f0197
Import of MetaIO HEAD. Keep old CMakeLists to compile correctly.
Jun 16, 2016
03b7bf1
REMOVE: disabled stray print statement
Jun 16, 2016
ccd5bbc
cleaned LET actor, added LET to phaseSpaceActor, added AtomicNumber f…
andiresch Jun 17, 2016
5e68a93
update LET actor, cleaned
andiresch Jun 17, 2016
e61d559
corrected bug due to cleaning
andiresch Jun 20, 2016
ae79371
my dose and fluence actor
andiresch Jun 20, 2016
54455b7
Merge remote-tracking branch 'andreas/cleanedLETactorForUploadJune' i…
dsarrut Jun 21, 2016
b45f977
cosmtic
dsarrut Jun 21, 2016
b2d0184
cosmetic
dsarrut Jun 21, 2016
4610cbf
correct compatibility with root5
dsarrut Jun 21, 2016
864bdd2
update example
dsarrut Jun 21, 2016
02fea4a
average kin energy in LET actor
andiresch Jun 21, 2016
bf22628
More stray prints and small update to pgtle actor
Jun 21, 2016
ce40db5
removed small bug due to cleaning
andiresch Jun 21, 2016
a22a68a
kin Energy fluence weighted
andiresch Jun 21, 2016
e1681a3
kin Energy fluence averaged
andiresch Jun 21, 2016
954d3ed
cosmetic kinEnergyAv
andiresch Jun 21, 2016
3ae37eb
add db to example
dsarrut Jun 24, 2016
19230ec
add weight in PromptGamma TLE actor
dsarrut Jun 24, 2016
d5cab43
Merge remote-tracking branch 'remotes/andreas/correctedCleanedVersion…
dsarrut Jun 24, 2016
c1bdd81
Merge branch 'develop' of git.creatis.insa-lyon.fr:opengate-creatis i…
dsarrut Jun 24, 2016
11e759d
revert andy modification
dsarrut Jun 28, 2016
ce8ca81
remove warning
dsarrut Jun 28, 2016
ad296e1
initialize non initialized variable
dsarrut Jun 28, 2016
63a296d
ROOT version check
patayg Jun 30, 2016
1ae39d0
Abort on critical errors.
patayg Jul 1, 2016
f4b186f
Merge pull request #77 from patayg/devel-pg-rootversion
dsarrut Jul 6, 2016
3b8fafb
Merge pull request #78 from patayg/devel-pg-louderror
dsarrut Jul 6, 2016
afca1ac
CleanUp
May 3, 2016
788fc86
fixed relative path to visu.mac in example_fastY90
canonnervio Jul 11, 2016
0275497
Merge pull request #79 from canonnervio/develop
dsarrut Jul 12, 2016
cc23d04
Correction of arf secondaries direction bug and computeTable misinde…
Jul 26, 2016
7a0dafa
Merge branch 'gitopengate/develop' into dicom-dev
ThomasDeschler Aug 12, 2016
487a86d
Minor modifications
ThomasDeschler Aug 12, 2016
18199c1
Minor modification
ThomasDeschler Aug 12, 2016
58fc6d8
Cosmetic modifications
ThomasDeschler Aug 12, 2016
cb71a2a
use boolean instead of string to store convergence/divergence
Aug 19, 2016
a71a017
prefer std::string over C-style character strings
Aug 19, 2016
f8c96a3
sanitize preprocessor directives
Aug 25, 2016
7ee5591
new generation option, preprocessor sanitation
Aug 25, 2016
f771c72
add new spot/vertex generation method
Aug 25, 2016
68c1d47
make GateSourcePencilBeam re-initializable
Aug 26, 2016
dd3ddc4
TotalNbProtons is a double, not an int
Aug 26, 2016
01b9eaa
BeginOfEventAction must be enabled for SpotID output
Aug 31, 2016
8abce19
more coding style consistency
Aug 31, 2016
ed36996
adding std:: namespace before istream typename
Sep 2, 2016
f7e09c0
Change MHD interfile to take into account numberOfEnergyWindows*Numbe…
Sep 2, 2016
00eecb5
Merge remote-tracking branch 'github/develop' into develop
dsarrut Sep 6, 2016
ce13288
Merge pull request #84 from djboersma/TPSpencilbeamIssue76
dsarrut Sep 15, 2016
4a9802f
Merge remote-tracking branch 'github/develop' into develop
dsarrut Sep 15, 2016
071dd73
Merge remote-tracking branch 'origin/metaio' into develop
dsarrut Sep 15, 2016
d29e287
Add: mhd-dcm comparison example
ThomasDeschler Sep 15, 2016
742dea5
Merge 'gitopengate/develop' into dicom-dev
ThomasDeschler Sep 15, 2016
45ec64f
Fix: bypassing GEANT4 bug
ThomasDeschler Sep 17, 2016
93555d3
Fixed in scene geometry from input RTK file. Translation (e.g., via T…
Sep 20, 2016
6a8d1d5
make sure itkThirdParty.h is generated
Oct 1, 2016
c807a13
Add changes to properly run tests dedicated to imaging modalities
albertine Oct 3, 2016
a9cef2c
PromptGammaActor: abort when database not found to prevent further error
Oct 3, 2016
4348e50
Merge branch 'develop' of gitopengate:opengate into develop
dsarrut Oct 4, 2016
edd3d08
Merge branch 'itk3rdpartyfix' of https://github.com/djboersma/Gate in…
dsarrut Oct 4, 2016
854dbff
Merge branch 'djboersma-itk3rdpartyfix' into develop
dsarrut Oct 4, 2016
0623467
Merge branch 'develop' into TomThePhysicist-dicom-dev
albertine Oct 4, 2016
c12d2c8
Revert "Merge pull request #63 from JStrydhorst"
ThomasDeschler Oct 5, 2016
45cb3b1
Fix Github Issue #93
Oct 6, 2016
340c5ce
DoseSourceActor plus required changes to TPSPencilBeam
Oct 6, 2016
e1f23ef
Bugfix: MET_LONG is a long, not int
Oct 7, 2016
1a10572
helpful comment SourceofPGData
Oct 11, 2016
9b869b7
Build sources providing DICOM images support in GATE only if GATE_USE…
albertine Oct 12, 2016
116d18f
ConvertMuToProtons documented
Oct 13, 2016
2c94cf6
Include Compute Capabilities for newer GPUs
ekleung Oct 19, 2016
7b22fa8
Create test.txt
ekleung Oct 19, 2016
d99d697
Create test.txt
ekleung Oct 19, 2016
af8c5cc
Delete test.txt
ekleung Oct 19, 2016
c6c1ebe
Delete test.txt
ekleung Oct 19, 2016
55458ee
Create test.txt
ekleung Oct 19, 2016
f67588f
Create test2.txt
ekleung Oct 19, 2016
e8b5a60
Delete test.txt
ekleung Oct 19, 2016
be9a089
Delete test2.txt
ekleung Oct 19, 2016
18df295
Create .gitkeep
ekleung Oct 19, 2016
1f0f512
Create .gitkeep
ekleung Oct 19, 2016
7de3868
Rewrote Spot ID bookkeeping in TPSPencilBeam, to make compatible with…
Oct 25, 2016
1f42ab0
remove warning
dsarrut Oct 25, 2016
9fc6d73
typofix
Oct 26, 2016
5f51094
update doc url
dsarrut Nov 10, 2016
30304bd
Added C++1y flag, seems to be required when compiling with ROOT6
Nov 10, 2016
3b99e67
bugfix: get rid of crash due to double delete
Nov 15, 2016
737e367
Revert "typofix"
dsarrut Nov 24, 2016
9475cc2
Revert "Added C++1y flag, seems to be required when compiling with RO…
dsarrut Nov 24, 2016
7121a85
Merge branch 'develop-neutron' of https://github.com/TomThePhysicist/…
dsarrut Nov 24, 2016
0cb223e
Merge branch 'patch-1' of https://github.com/ekleung/Gate into ekleun…
dsarrut Nov 24, 2016
660b7de
Merge branch 'CTgeantAPIupdate' of https://github.com/djboersma/Gate …
dsarrut Nov 24, 2016
d4dd246
Merge branch 'djboersma-CTgeantAPIupdate' into develop
dsarrut Nov 24, 2016
dd19b16
Merge branch 'ekleung-patch-1' into develop
dsarrut Nov 24, 2016
156f712
Typofix
Nov 24, 2016
988f886
Fix total file in fixed forced detection
Nov 28, 2016
700a0ef
Add new process names for tracking scatter processes
Dec 5, 2016
914b106
Add ScatterOrderActor in example but output is commented out
Dec 5, 2016
e7027ec
add missing .gitignore files
Dec 5, 2016
8f58d3c
Merge branch 'develop' of gitopengate:opengate into develop
albertine Dec 7, 2016
92b35e4
Fixing visibility warning
ThomasDeschler Jan 24, 2017
76b8457
Add changes to benchmarks/CMakeLists.txt
albertine Jan 24, 2017
746488b
Merge branch 'dicom-dev' of https://github.com/TomThePhysicist/Gate i…
albertine Jan 24, 2017
4737067
Merge branch 'TomThePhysicist-dicom-dev' into develop
albertine Jan 24, 2017
2b845a1
Fixing bad origin and spacing values
ThomasDeschler Jan 24, 2017
03fb59a
Merge branch 'dicom-dev' of https://github.com/TomThePhysicist/Gate i…
albertine Jan 24, 2017
a618135
Merge branch 'TomThePhysicist-dicom-dev' into develop
albertine Jan 24, 2017
58b4db6
Merge branch 'develop' of https://github.com/OpenGATE/Gate into develop
albertine Jan 24, 2017
545b391
Showing voxelized volumes in visualization
ThomasDeschler Jan 26, 2017
4ca94f9
Merge branch 'dicom-dev' of https://github.com/TomThePhysicist/Gate i…
albertine Jan 27, 2017
d007b75
Merge branch 'TomThePhysicist-dicom-dev' into develop
albertine Jan 27, 2017
d35908e
Merge branch 'develop' of gitopengate:opengate into develop
albertine Jan 27, 2017
204675d
Cleaning, first test
albertine Jan 31, 2017
a48b67b
Cleaning: removing superbuild, benchmarks and cluster_tools directories
albertine Jan 31, 2017
f422ff2
Cleaning: removing cmake-modules, MacroFile_Example and license direc…
albertine Jan 31, 2017
ec3b599
Cleaning: removing CMakeLists.txt, CTestConfig.cmake, Gate.cc and Gat…
albertine Jan 31, 2017
bc6aab8
Move all examples sub-directories to the root directory
albertine Jan 31, 2017
c7abf60
Cleaning: removing CMakeLists.txt and AddExternalData.sh files
albertine Jan 31, 2017
a56e10d
Cleaning: removing source directory
albertine Jan 31, 2017
9c035b3
Cleaning: removing all .md5 files from examples
albertine Jan 31, 2017
69b744f
Git LFS initialization
albertine Jan 31, 2017
d56f665
Cleaning: removing .gitignore file from example_ARF
albertine Jan 31, 2017
7b93624
Typo bug fix
albertine Jan 31, 2017
2f95fed
Git LFS: add example_ARF/HowToUse_ARF.pdf file
albertine Jan 31, 2017
5d40114
Cleaning AND Git LFS: removing all necessary .gitignore files from ex…
albertine Jan 31, 2017
f9f492a
Git LFS: add new tracked patterns
albertine Jan 31, 2017
1b4c10d
Git LFS: add png to tracked patterns
albertine Jan 31, 2017
65fc494
Git LFS: add example_UserSpectrum/output/SpectrumOutput.png file
albertine Jan 31, 2017
87b6f72
Update readme.md
dsarrut Feb 2, 2017
8aeff84
rename
dsarrut Feb 2, 2017
89f9d2e
rename folders
dsarrut Feb 2, 2017
9ded95d
rename (remove example_)
dsarrut Feb 2, 2017
e169d12
Update readme.md
dsarrut Feb 2, 2017
12d2241
Update readme.md
dsarrut Feb 2, 2017
ba725de
Update readme.md
dsarrut Feb 2, 2017
980c2fb
Git LFS: add imaging/fastY90/output/fastY90output.png
albertine Feb 2, 2017
6eacb45
Git LFS: add dosimetry/doseactor/voxelized-phantom/data/PhantomSlice1…
albertine Feb 2, 2017
2641c6e
Git LFS: add imaging/PhantomSource/Voxelized_Phantom_Source/brain_pha…
albertine Feb 2, 2017
5ddec2c
Git LFS: add imaging/Optical/voxelized-source-phantom/optical_tumor.i…
albertine Feb 2, 2017
e7a1871
Git LFS: add dosimetry/Radiotherapy/example3/data/patient-4mm.raw file
albertine Feb 2, 2017
138c720
Git LFS: add dosimetry/dosimetry/brachytherapy/data/ct-2mm.raw file
albertine Feb 2, 2017
0392346
Git LFS: add dosimetry/dosimetry/protontherapy/data/patient-2mm.raw file
albertine Feb 2, 2017
008e713
Git LFS: add dosimetry/dosimetry/electron_radiotherapy/data/Rando.raw…
albertine Feb 2, 2017
38e5a9e
Cleaning: removing dosimetry/Radiotherapy/example10/data/phantom.raw.…
albertine Feb 2, 2017
8445222
Git LFS: add dosimetry/dosimetry/molecular-therapy-I131/data/CT_128_1…
albertine Feb 2, 2017
54ddb5d
Git LFS: add dosimetry/dosimetry/molecular-therapy-I131/data/PET_64_6…
albertine Feb 2, 2017
a17be50
Git LFS: add dosimetry/dosimetry/molecular-therapy-I131/data/air-mous…
albertine Feb 2, 2017
2c75c54
Git LFS: add imaging/CT/fixedForcedDetectionCT/data/ICRP_AF.raw file
albertine Feb 2, 2017
97daccb
Add new example: Thermal
albertine Mar 6, 2017
5f9c519
Add new example: Thermal
albertine Mar 6, 2017
6dd6573
Git LFS: add imaging/Thermal/MOBY1cmTumor.i33 file
albertine Mar 6, 2017
e61f727
Git LFS: add dosimetry/Radiotherapy/example8/data/EGS.root
albertine Mar 10, 2017
5717c11
Git LFS: add dosimetry/Radiotherapy/example9/data/EGS.root
albertine Mar 10, 2017
a4df5a6
Git LFS: add dosimetry/Radiotherapy/example10/data/phantom.raw
albertine Mar 10, 2017
6c1823a
Git LFS: add dosimetry/dosimetry/external-beam-therapy-photon/data/pa…
albertine Mar 10, 2017
5b2f16a
Git LFS: add imaging/UserFluenceSource/userFluenceSource_documentatio…
albertine Mar 10, 2017
f6f3d29
Git LFS: add imaging/UserFluenceSource/data/userFluenceImage.raw
albertine Mar 10, 2017
4ec3831
Git LFS: add imaging/UserFluenceSource/userFluenceSource_documentatio…
albertine Mar 10, 2017
7a230ca
Git LFS: add imaging/fluorescence/data/voxelisedPhantom.raw
albertine Mar 10, 2017
ef37709
Git LFS: add tar.gz to tracked patterns
albertine Mar 10, 2017
3709bad
Git LFS: add dosimetry/Radiotherapy/example3/data/linac-beam.root
albertine Mar 10, 2017
e9c8d2c
Git LFS: add gpumacros/ct/data/patient-2mm.raw
albertine Mar 10, 2017
2bc818b
Git LFS: add imaging/DICOM/mhd-dcm-comparison/data/dataDICOM.tar.gz
albertine Mar 10, 2017
2a9c287
Update readme.md
albertine Mar 10, 2017
7fc9cbc
Git LFS: add imaging/TimeActivityCurve/data/NCAT_atnfiles.tar.gz
albertine Mar 10, 2017
acaf83b
Git LFS: add imaging/vpgtle/stage1/data/patient-2mm.raw
albertine Mar 10, 2017
67f5a77
Git LFS: add imaging/vpgtle/stage1/data/pgdb.root
albertine Mar 10, 2017
52d26c6
Git LFS: add imaging/vpgtle/stage2/data/patient-2mm.raw
albertine Mar 10, 2017
0ac0a4b
Git LFS: add imaging/vpgtle/stage2/data/source.raw
albertine Mar 10, 2017
8a84910
Update readme.md
albertine Mar 10, 2017
0a49d86
Git LFS: add imaging/ROOT_Analyse/data_PET.root
albertine Mar 10, 2017
481d3d9
Git LFS: add imaging/ROOT_Analyse/data_Voxel_Phantom.root
albertine Mar 10, 2017
b7a4bae
Git LFS: add imaging/TimeActivityCurve/TAC_Example.png
albertine Mar 10, 2017
dcef01f
Git LFS: add gpumacros/optical/optical_phantom.bin
albertine Mar 10, 2017
a2314b1
Update readme.md
albertine Mar 10, 2017
8a827fb
Git LFS: add gpumacros/pet/data/thorax_phantom.bin
albertine Mar 10, 2017
cd2e04c
Git LFS: add gpumacros/photradthera/data/patient-2mm.raw
albertine Mar 10, 2017
206935f
Git LFS: add imaging/Optical/OpticalSimulation_Reference.root
albertine Mar 10, 2017
3b79654
Create readme.md
albertine Mar 10, 2017
0b95f7d
Update readme.md
albertine Mar 10, 2017
d0b6ec7
Create readme.md
albertine Mar 10, 2017
1374563
Update readme.md
albertine Mar 10, 2017
8747865
Create readme.md
albertine Mar 10, 2017
07b8031
Create readme.md
albertine Mar 10, 2017
2c4fc47
Add imaging/ARF/readme.md
albertine Mar 10, 2017
271c4fa
Update readme.md
albertine Mar 10, 2017
2710383
Create readme.md
albertine Mar 10, 2017
65e8563
add example FFD
dsarrut Mar 14, 2017
99d85ac
Update readme.md
dsarrut Mar 14, 2017
d6e1a8f
Update readme.md
albertine Mar 14, 2017
bc91e69
Create readme.md
albertine Mar 14, 2017
3327dd7
Create readme.md
albertine Mar 14, 2017
3b080b3
Update readme.md
albertine Mar 14, 2017
02852cd
Create readme.md
albertine Mar 14, 2017
c573e55
Create readme.md
albertine Mar 14, 2017
b6c3f36
Create readme.md
albertine Mar 14, 2017
15a93f3
Create readme.md
albertine Mar 14, 2017
6f1c274
Create readme.md
albertine Mar 14, 2017
24981fc
Update readme.md
albertine Mar 14, 2017
52dfeb6
Update readme.md
albertine Mar 14, 2017
8cff0b6
Update readme.md
albertine Mar 14, 2017
24d0516
Create readme.md
albertine Mar 14, 2017
86c7e8d
Update readme.md
albertine Mar 14, 2017
ae4e6e4
Update readme.md
albertine Mar 14, 2017
14ac615
Update readme.md
albertine Mar 14, 2017
90472f8
Update readme.md
albertine Mar 14, 2017
5ec0ae9
Update
albertine Mar 14, 2017
d47aebd
Update readme.md
albertine Mar 14, 2017
a9905c5
Update readme.md
albertine Mar 14, 2017
3d72dc1
Update readme.md
albertine Mar 14, 2017
1c7fdeb
Add example associated to new LUT Davis model
albertine Mar 17, 2017
6716ed0
Fix bug in imaging/DICOM/mhd-dcm-comparison/mac files
albertine Mar 24, 2017
2a62079
Update readme.md
albertine Mar 27, 2017
34963f8
Update readme.md
albertine Mar 27, 2017
742c35f
Update imaging/ROOT_Analyse/PET_Analyse.C and imaging/ROOT_Analyse/Vo…
albertine Mar 27, 2017
34e4034
Git LFS: add docx to tracked patterns
albertine Mar 27, 2017
a856696
Git LFS: add imaging/ARF/ARF_doc.docx
albertine Mar 27, 2017
54017a7
Create readme.md
albertine Mar 28, 2017
b8aa995
Update readme.md
albertine Mar 28, 2017
97c2e11
Update readme.md
albertine Mar 28, 2017
55b5385
Fix some bugs in ROOT .C files and .mac files
albertine Mar 30, 2017
e7b3599
Merge branch 'master' of https://github.com/OpenGATE/GateContrib
albertine Mar 30, 2017
0ba0645
Add description to readme SPECT FFD
cajgfinger Mar 30, 2017
6ef81cb
Removal of detectorResponse file in .mac
cajgfinger Mar 30, 2017
c20dea2
Merge pull request #3 from cajgfinger/patch-2
albertine Mar 31, 2017
097fb02
Merge pull request #4 from cajgfinger/patch-1
albertine Mar 31, 2017
a503163
Add the 5 modified G4 classes to be replaced in Geant4 10.2 and 10.3 …
albertine Mar 31, 2017
4c22f59
Fix some tiny bugs in examples. Now, they all should work correctly w…
albertine Apr 3, 2017
7527ffc
Place source after initialize
cajgfinger Apr 12, 2017
ede1af4
Place source after initialize
cajgfinger Apr 12, 2017
28ac26f
Merge pull request #5 from cajgfinger/patch-4
albertine Apr 13, 2017
1d1ffaa
Merge pull request #6 from cajgfinger/patch-3
albertine Apr 13, 2017
8b2db1d
TEPC actor example:
fsmekens Apr 13, 2017
0b75da6
Documentation on:
fsmekens Apr 13, 2017
d5d9d57
New example for the thermal simulation and new folder structure
fsmekens Sep 21, 2018
8863d39
Merge branch 'thermalActorExamples' into fsmekens-contrib
fsmekens Sep 21, 2018
c4d1470
remove alias in macro
fsmekens Sep 21, 2018
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9 changes: 9 additions & 0 deletions .gitattributes
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*.pdf filter=lfs diff=lfs merge=lfs -text
*.raw filter=lfs diff=lfs merge=lfs -text
*.root filter=lfs diff=lfs merge=lfs -text
*.i33 filter=lfs diff=lfs merge=lfs -text
*.bin filter=lfs diff=lfs merge=lfs -text
*.mha filter=lfs diff=lfs merge=lfs -text
*.png filter=lfs diff=lfs merge=lfs -text
*.tar.gz filter=lfs diff=lfs merge=lfs -text
*.docx filter=lfs diff=lfs merge=lfs -text
38 changes: 38 additions & 0 deletions AUTHORS
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#Contributors to the source code (since 2012)
Arbor Nicolas
Benoit Didier
Bert Julien
Boersma David
Cajgfinger Thomas
Chamberland Marc
Cuplov Vesna
Dedes George
Deschler Thomas
Dubois Albertine
Fuchs Hermann
Garcia Marie-Paule
Germano Russo
Gil Alex Vergara
Grevillot Loic
Gueth Pierre
Huisman Brent
Jan Sebastien
Joshi Kiran
Lemarechal Yannick
Letang Jean-Michel
Lönn Gustaf
Maigne Lydia
Martinez Imma
Miklavec Mojca
Mouton Claire
Patay Gergely
Perez Hector
Rit Simon
Romero Edward
Sarrut David
Smekens Francois
Strydhorst Jared
Stute Simon
Suhard Jerome
Vila Marc
Volgyes David
24 changes: 0 additions & 24 deletions AddExternalData.sh

This file was deleted.

40 changes: 0 additions & 40 deletions CMakeLists.txt

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