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chore(3.12): replace pkg_resources with importlib #105

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chore(3.12): replace pkg_resources with importlib #105

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9 changes: 6 additions & 3 deletions kineticsTools/ipdModel.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
from pkg_resources import Requirement, resource_filename
from importlib import resources
import logging
import gzip
import os.path as op
Expand Down Expand Up @@ -47,8 +47,11 @@


def _getAbsPath(fname):
return resource_filename(Requirement.parse(
'kineticsTools'), 'kineticsTools/%s' % fname)
try:
with resources.as_file(resources.files('kineticsTools') / fname) as path:
return str(path)
except:
return os.path.join(os.path.dirname(__file__), path)


class GbmContextModel(object):
Expand Down
10 changes: 6 additions & 4 deletions kineticsTools/ipdSummary.py
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@
import numpy as np
import queue
import traceback
from pkg_resources import Requirement, resource_filename
from importlib import resources

from pbcommand.common_options import add_debug_option
from pbcommand.cli import get_default_argparser_with_base_opts, pacbio_args_runner
Expand All @@ -43,9 +43,11 @@ class Constants(object):


def _getResourcePathSpec():
default_dir = resource_filename(Requirement.parse(
'kineticsTools'), 'kineticsTools/resources')
return loader.getResourcePathSpec(default_dir)
try:
with resources.as_file(resources.files('kineticTools') / 'resources') as path:
return loader.getResourcePathSpec(path)
except:
return loader.getResourcePathSpec(os.path.join(os.path.dirname(__file__), 'resources'))


def _validateResource(func, p):
Expand Down