small fix for ONT callers

e.g. for situations, where we have CIPOS=.,10

SVTools.py

@@ -67,6 +67,15 @@ def parse_line(self, line):
         cipos = cipos.split(",")
         ciend = ciend.split(",")
 
+        if(cipos[0] == "."):
+            cipos[0] = "-10"
+        if(cipos[1] == "."):
+            cipos[1] = "10"
+        if(ciend[0] == "."):
+            ciend[0] = "-10"
+        if(ciend[1] == "."):
+            ciend[1] = "10"
+
         self.cipos1 = int(cipos[0])
         self.cipos2 = int(cipos[1])
 
@@ -153,4 +162,4 @@ def parse_file(self, filename):
                         continue
                     #print(self.tool + " | ", end = '')
                     #sv.print_sv()
-                    self.sv_list.append(sv)
+                    self.sv_list.append(sv)