Percolation

The whole pipeline of the project is implemented in file whole_pipeline_percolation.py arguments -

The input files for various stages are provided in following link https://doi.org/10.5281/zenodo.4719152

For calculation of features foll the file README_for_feature_calculations.txt

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
README.md		README.md
README_for_feature_calculations.txt		README_for_feature_calculations.txt
bed_to_csv_convet.py		bed_to_csv_convet.py
erdos_renyi.py		erdos_renyi.py
graph_datatypes.py		graph_datatypes.py
linear_edge.py		linear_edge.py
percolation_opt.py		percolation_opt.py
pipe.py		pipe.py
pipe.sh		pipe.sh
probability_matrix.py		probability_matrix.py
random_edge.py		random_edge.py
read nodes and edges.py		read nodes and edges.py
run_percolation_opt.sh		run_percolation_opt.sh
run_percolation_opt_all.sh		run_percolation_opt_all.sh
split_chiapet_into_chromosomes.sh		split_chiapet_into_chromosomes.sh
whole_pipeline_percolation.py		whole_pipeline_percolation.py

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