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@aramanlab

Raman Lab of UChicago

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  1. SpectralInference.jl Public

    Spectral [phenotype/phylogenetic] Inference package

    Julia 1 1

  2. spipy Public

    Python tools for spectral inference

    Python

  3. Doran_etal_2023 Public

    Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"

    Jupyter Notebook

Repositories

Showing 7 of 7 repositories
  • Doran_etal_2023 Public

    Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"

    Jupyter Notebook 0 0 0 0 Updated Jan 18, 2025
  • SpectralInference.jl Public

    Spectral [phenotype/phylogenetic] Inference package

    Julia 1 BSD-3-Clause 1 0 0 Updated Jun 4, 2024
  • Oliveira_et_al_2024_V_Demo Public

    Statistical design of a synthetic bacterial community that clears a multi-drug resistant gut pathogen [V2]

    Jupyter Notebook 0 0 0 0 Updated Mar 28, 2024
  • Doran_etal_2022 Public

    Analyses for "An evolution-based framework for describing human gut bacteria"

    Jupyter Notebook 0 0 0 0 Updated Jan 25, 2024
  • SPI.jl Public
    Julia 0 BSD-3-Clause 0 0 2 Updated Nov 29, 2023
  • spipy Public

    Python tools for spectral inference

    Python 0 BSD-3-Clause 0 0 0 Updated Nov 29, 2023
  • NewickTreeTools.jl Public
    Julia 0 BSD-3-Clause 0 0 11 Updated Oct 29, 2023